Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00383 ATGGAGAATGAGTTTGAGATGAATGAATTAGGATCAGGAGAAGTAGAGATGAAGAAGAAAGGTGCAGGTGGAGGAGGAGGAAGAGGGAAAATAGAAATAAAGAGGATTGAGAACACAACGAATAGGCAAGTAACTTTCTGCAAGCGCCGTAACGGTTTGCTGAAGAAAGCGTATGAATTATCTGTTCTGTGTGATGCTGAAGTTGCTCTTGTTATCTTCTCAACCCGTGGTCGCCTCTATGAGTATGCCAACAACAGTGTTAGAGGAACTATAGACAGGTATAAGAAAGCATCTGCTGCTTCATCAAGTGCAGAATCTGTATCTGAAGCTAATACACAGTTTTATCAGCAGGAATCATCCAAATTAAAAAGACAGATTAGAGACATTCAGAATCTAAACAGGCACATCCTTGGGGAAGCACTTAGCTCTTTGAGTTTAAAAGAATTAAAGAACCTTGAGAGTAGATTGGAGAAAGGTCTAAGCAGAGTTAGATCCAGAAAGCATGAAGCTTTGTTTGCGGATGTGGAGTTCATGCAAAAGCGGGAAATTGAGCTGCAAAACCATAACAATTTTCTGCGAGCTAAGGTATATATATATTTCATTATAGCTGAATCTGAGAGAGCACAACAAGAGCAACCAAATATGATGGGAGGAAGTGTGTGCGATCAATCATTACCTTCACAGTCATATGATCACCGTAATTTCTTCCCTGCCAATCTCCAACTCTAA 729 0.4005 MENEFEMNELGSGEVEMKKKGAGGGGGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANNSVRGTIDRYKKASAASSSAESVSEANTQFYQQESSKLKRQIRDIQNLNRHILGEALSSLSLKELKNLESRLEKGLSRVRSRKHEALFADVEFMQKREIELQNHNNFLRAKVYIYFIIAESERAQQEQPNMMGGSVCDQSLPSQSYDHRNFFPANLQL. 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00383 242 ProSiteProfiles MADS-box domain profile. 26 86 IPR002100 GO:0003677|GO:0046983
Seca7g00383 242 Pfam K-box region 110 196 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca7g00383 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 35 82 IPR002100 GO:0003677|GO:0046983
Seca7g00383 242 MobiDBLite consensus disorder prediction 11 28 - -
Seca7g00383 242 ProSiteProfiles K-box domain profile. 112 208 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca7g00383 242 FunFam agamous-like MADS-box protein AGL11 38 121 - -
Seca7g00383 242 CDD MADS_MEF2_like 31 96 IPR033896 GO:0000977|GO:0045944
Seca7g00383 242 PRINTS MADS domain signature 63 84 IPR002100 GO:0003677|GO:0046983
Seca7g00383 242 PRINTS MADS domain signature 28 48 IPR002100 GO:0003677|GO:0046983
Seca7g00383 242 PRINTS MADS domain signature 48 63 IPR002100 GO:0003677|GO:0046983
Seca7g00383 242 SUPERFAMILY SRF-like 27 102 IPR036879 GO:0003677|GO:0046983
Seca7g00383 242 Coils Coil 115 135 - -
Seca7g00383 242 Gene3D - 38 121 IPR036879 GO:0003677|GO:0046983
Seca7g00383 242 ProSitePatterns MADS-box domain signature. 28 82 IPR002100 GO:0003677|GO:0046983
Seca7g00383 242 SMART madsneu2 26 85 IPR002100 GO:0003677|GO:0046983
Seca7g00383 242 Coils Coil 146 166 - -
Seca7g00383 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 17 212 - -
Seca7g00383 242 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00383 Seca-Chr7 3967983 3972843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00383 27 240 MADS-box Gene Family AT3G58780 69.231 5.75e-101 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca7g00383 K-box 3.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00383 K09264 - gmx:100808734 337.035