Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00350 ATGATTGGTGAAGGAGGCTTTGGGAAGGTATACAAAGGACGAATTAAAAGCATAAATCAGGTAGTAAGTTACCTTCTGAATGTTGTGTGTTACATACAGGTTGTTGCTGTGAAGCAACTCAATAGGAATGGATACCAAGGAAGCAGGGAATTTGTTGTAGAGGTTTTGATTTTGAGTCTCTTGGATCACCCTAACCTTGTCAATTTGGTAGGGTATTGTGCAGATGGTGATCAAAGGATTTTGGTATATGAGTACATGGAGAATGGTTCTTTAGAAGATCACCTTCTTGAACTACCTTCGGACAGAAAGCCCTTGGACTGGCATACTAGAATGAAAATTGCAGAAGGTGCAGCAAAAGGACTTGAATATTTACATGAAGTAGCAAATCCACCAGTGATTTATCGTGATTTCAAAGCATCAAACATATTATTAGATGAAAACTTCAATCCAAAGCTCTCTGATTTTGGACTTGCAAAGCTTGGTCCAACTGGTGATAAGACACATGTAACCACCAGGGTGATGGGAACTTATGGTTATTGTGCACCTGAGTATGCCTCAACAGGTCAATTGACTACAAAATCAGATGTATACAGCTTTGGAGTAGTGTTTTTAGAAATTATCACAGGAAAAAGAGTGCTTGATTTTTCAAGACCAGCTGCAGAGCAAAACTTAGTCACTTGGGCACAGCCACTACTCAGAGACAGAATGAAATTTACATTAATGGCTGATCCAATGCTAGAAGGAAACTACCCCATAAAGGGTCTATACCAAGCAGTAGCAGTTGCAGCAATGTGTCTTCAGGAGGAAGCTGATACTCGACCTTTGATTAGTGATGTAGTTACAGCTCTAAATGTCTTAGCTAATAAGAAGCATGTAGAAGTGGGTAAACAACAACATACAAAAAAGACTCATTTTGAGGAAGGAGAATGTAGTTGA 936 0.3921 MIGEGGFGKVYKGRIKSINQVVSYLLNVVCYIQVVAVKQLNRNGYQGSREFVVEVLILSLLDHPNLVNLVGYCADGDQRILVYEYMENGSLEDHLLELPSDRKPLDWHTRMKIAEGAAKGLEYLHEVANPPVIYRDFKASNILLDENFNPKLSDFGLAKLGPTGDKTHVTTRVMGTYGYCAPEYASTGQLTTKSDVYSFGVVFLEIITGKRVLDFSRPAAEQNLVTWAQPLLRDRMKFTLMADPMLEGNYPIKGLYQAVAVAAMCLQEEADTRPLISDVVTALNVLANKKHVEVGKQQHTKKTHFEEGECS. 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00350 311 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Seca7g00350 311 PIRSF ILK 30 306 - -
Seca7g00350 311 ProSiteProfiles Protein kinase domain profile. 1 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g00350 311 CDD STKc_IRAK 2 284 - -
Seca7g00350 311 SUPERFAMILY Protein kinase-like (PK-like) 1 288 IPR011009 -
Seca7g00350 311 FunFam Serine/threonine-protein kinase PBS1 86 303 - -
Seca7g00350 311 Gene3D Transferase(Phosphotransferase) domain 1 87 310 - -
Seca7g00350 311 Gene3D Phosphorylase Kinase; domain 1 2 86 - -
Seca7g00350 311 PANTHER OS07G0668900 PROTEIN 1 292 - -
Seca7g00350 311 Pfam Protein tyrosine and serine/threonine kinase 2 227 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00350 Seca-Chr7 3572296 3575858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00350 1 287 Glycoside Hydrolase AT3G07070 68.990 2.09e-144 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Seca7g00350 PK_Tyr_Ser-Thr 2.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00350 - - gmx:100797557 512.301