Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00340 ATGACCGACATACAGAGGGCTTCTCTTCCCCACGCGCTTTGTGGTCGTGACATTCTCGGCGCCGCCAAAACTGGCTCCGGCAAAACCCTCGCTTTCATTATCCCTGTGTTGGAGAAGTTATATAGAGAGAGATGGGGACCTGAAGATGGGGTTGGCAGCATCATTATATCACCTACAAGAGAATTAGCTGGTCAGATATTTGATGTGTTGAAGTGTGTTGGGAAGTACCATGGTTTTAGTGCTGGCCTCCTCATTGGTGGTCGCAAGGATGTTGACATGGAGAAAGAACGTGTCAGTGAACTCAACATATTGATCTGCACACCCGGTCGCCTTCTACAACACATGGATGAAACTCCCAATTTTGATTGTTCACAGATGCAGGTTTTGGTACTAGATGAGGCTGATCGTATTCTTGATAGTGGATTCAAGAAGGAACTAAATGCAATCATCTCACAACTACCAAAGCGCAGACAAACCTTGCTTTTCTCAGCAACTCAAACAAAGTCGATCCAAGATCTTGCAAGACTAAGTTTGAAGGACCCAGAGTATCTGAGCGTGCACGAAGAGTCTGTGACTGCCACTCCTACTCTCTTGAAGCAAATTGTGATGATTGTTCCCCTGGATCAAAAGCTAGATATGCTGTGGAGTTTCATAAAGACACATCTACAGTCAAAAATACTTGTTTTTCTTTCAAGCTGTAAACAGGTAAAATTTGTCTTTGAAGCATTTAAGAAACTGCACCCTGGCGTACCGCTGAAGTGCCTTCACGGGAGGATGAAACAGGAAAGAAGAATGGCAATATATTCTGAGTTTTGTGAAAAGCGTTCAGTTCTCTTCTCCACTGATGTGGCTGCAAGAGGACTTGATTTTAATAAAGCAGTTGACTGGGTTGTTCAGGTGGATTGTCCTGAAAATGTAGCATCTTACATACATAGAGTTGGCCGTACTGCTCGTTATAAGTCTGGTGGAAAGTCAGTTTTATTTCTACTGCCTTCAGAAATTCAAATGCTTGAAAGGTTAAAAGCAGCAAAGGTTCCAGTGCATTTTAACAAGCCAAGGAAAGAACTACTGCAACCAGTTTCTGGTTTGTTGGCATCTTTACTGGCCAAGTACCCAGACCTGCAGCATCGGGCTCAAAGGGCATTTGTCACATATTTGAGATCCATCCATATCCAAAAGGATAAAGAGATCTTTGATGTAATGAAACTGCCTATTGATGAATATTCAGCATCATTAGGTTTGCCAATGACCCCCAAAATCCGTTTTCTAAACCAGAAAATTAAATCTAAAGCTGTGTCAACAAAATCAGTTTTAGTTGAACCAGAGGATGCAGACAAGGAAAATATCTTGGAGGTTTCAGGAAAGAAGATAGACGATGTTGTTTTCAAAGATGAGGAAGCTGAAAATGATCTTCTTCAGGCAGCCGATACCTTAAATGAAGGCGAATTGAAGTCATCTGAAATTGGAGAAATAATGTATGTTCCCATATTTAGTTCATTCCTATGCAGACCAGCAACTCGTGTATTGAAGAAAAAGAAGCTTAAGATTAATGTACATAGACCACTGGGGACTAGGGTTGTATTTGACGATGAAGGCAACACACTTCCTCCACTAGCTAGGATTGCTGACACACAAAGTGGCAAGGAAACATTGCTACTTGACCCAGACCAAAAAGCTGAATACTATAAAAGGATGCGAGAGGATTTGAAAAAGGCAGACAAGGAAGACAAACTTCTAGAACGTCAGCGGCGTAGAGAAAAAAGAATCAAGCAGAAGATGAAGTGGAAGTCAGGGAATGTGGAAGAAGAGGACGACCAAGTTGATATTTCTGGGTCAGAGGATGAAACTGTAGATAGACGACATAAAAAGAGTAAAGTATACTTCAATAGCGACAGTGATGAGGGTGAAAGAAATGAAGTCACAGGGAATGCAGGTATTAGTGCTGGCAACATTACTTTGGAGGAGCAAGAAGCGCTGGCTTTGAAATTGTTAAATTCCATGCACTCATAG 2010 0.4184 MTDIQRASLPHALCGRDILGAAKTGSGKTLAFIIPVLEKLYRERWGPEDGVGSIIISPTRELAGQIFDVLKCVGKYHGFSAGLLIGGRKDVDMEKERVSELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKELNAIISQLPKRRQTLLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMIVPLDQKLDMLWSFIKTHLQSKILVFLSSCKQVKFVFEAFKKLHPGVPLKCLHGRMKQERRMAIYSEFCEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSGGKSVLFLLPSEIQMLERLKAAKVPVHFNKPRKELLQPVSGLLASLLAKYPDLQHRAQRAFVTYLRSIHIQKDKEIFDVMKLPIDEYSASLGLPMTPKIRFLNQKIKSKAVSTKSVLVEPEDADKENILEVSGKKIDDVVFKDEEAENDLLQAADTLNEGELKSSEIGEIMYVPIFSSFLCRPATRVLKKKKLKINVHRPLGTRVVFDDEGNTLPPLARIADTQSGKETLLLDPDQKAEYYKRMREDLKKADKEDKLLERQRRREKRIKQKMKWKSGNVEEEDDQVDISGSEDETVDRRHKKSKVYFNSDSDEGERNEVTGNAGISAGNITLEEQEALALKLLNSMHS. 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00340 669 MobiDBLite consensus disorder prediction 612 638 - -
Seca7g00340 669 Pfam DEAD/DEAH box helicase 2 172 IPR011545 GO:0003676|GO:0005524
Seca7g00340 669 Pfam Helicase conserved C-terminal domain 210 319 IPR001650 -
Seca7g00340 669 MobiDBLite consensus disorder prediction 588 644 - -
Seca7g00340 669 Gene3D - 195 449 IPR027417 -
Seca7g00340 669 Gene3D - 1 190 IPR027417 -
Seca7g00340 669 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 340 IPR027417 -
Seca7g00340 669 Pfam Domain of unknown function (DUF4217) 364 420 IPR025313 -
Seca7g00340 669 Coils Coil 562 582 - -
Seca7g00340 669 PANTHER RNA HELICASE 1 473 - -
Seca7g00340 669 CDD SF2_C_DEAD 198 329 - -
Seca7g00340 669 SMART helicmild6 237 320 IPR001650 -
Seca7g00340 669 SMART ultradead3 1 201 IPR014001 -
Seca7g00340 669 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 130 138 IPR000629 -
Seca7g00340 669 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 9 184 IPR014001 -
Seca7g00340 669 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 206 368 IPR001650 -
Seca7g00340 669 CDD DEADc_DDX10 1 187 - -
Seca7g00340 669 SMART DUF4217_3 359 422 IPR025313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00340 Seca-Chr7 3464429 3469826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00340 5 337 Eukaryotic Initiation Factors Gene Family AT3G19760 29.882 2.73e-35 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00340 K14776 - gmx:100792106 1140.95