Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00325 ATGGGTTGTTGTCAGAGTAGAAAAAGATCAGAGCCAGAGCACATTGGTTACAATCATACTAGGGGTGCTGGTGTGCACAATCACAAGAACCATGAACCCTTTGTCAACCCTTCTCATCAACCTTACCAATTACCTGAGAAACATGCTCCTCCTGCTGCAGCACCTAAAACACCTTGGAAGCCTGCCCCAAGCCCCAAACGTGTTCACAAGTCAGATGCTCATACAATTCTTGGGAAACCATTTGAGGATGTTAGGGAATTCTATACACTTGGGAAAGAATTGGGGAGAGGTCAATTTGGGGTGACTTATCTCTGCACTGAGAATTCAACTGGTTTGCAATATGCTTGCAAGTCCATTTCAAAGAGGAAGCTTACTAGCAAATCTGATAAGGAGGATATGAAGAGGGAGATTCAAATTATGCAGCATTTGAGTGGACAACCAAATATTGTTGAATTTAAAGGTGCTTATGAGGATAAACAATCAGTTCATGTTGTTATGGAGCTTTGTGCAGGTGGTGAGCTTTTTGATAGGATTATTGCAAAGGGGCACTATAGTGAAAGAGCTGCAGCTTCAATATGTAGACAAATTGATGACAAGGCACTTCTCAAGGCCACAGATTTTGGCTTGTCTGTCTTCATTGAAGAAGGAAAGGTGTATCGGGATATAGTTGGCAGTGCTTATTATGTTGCTCCAGAAGTTCTGCGTCGTAATTATGGGAAGGAAATAGATATATGGAGTGCAGGAGTTATGTTGTATATCTTACTTAGTGGTGTGCCTCCATTTTGGGCAGAGTCAGAAAAGGGAATATTTGATGCCATATTGGAAGGTCAAATTGATTTTCATAGTCATCCATGGCCAACCATATCAACCAGTGCTAAGGACCTTATTCGTAAGATGCTTATACAGGACCCAAAGAAACGCATTACTGCCACTCAGGTTCTAGAGCACCCCTGGCTTAAAGAAGGTGGAAATGCTCCTGACAAGCCAATAGACAGCGCAGTCCTTTCCAGAATGAAGCAATTCAGAGCAATGAATAAACTGAAAAAACTTGCCCTTAAGGTCATTGCTGAAAATCTTTCTGAAGAAGAAATCCAAGGTTTGAAGGCAATGTTTACAAATATGGACACTGACAAAAGTGGTACAATCACCTATGAGGAACTAAGAGCAGGATTGCAAAGACTTGGCTCAAAGCTTACTGAAGCTGAAGTGCGACAGCTTATGGACGCTGCTGATGTAGATGGAAATGGAACAATTGACTACATAGAATTCATAACTGCCACAATGCATAGACACCGGTTAGAAAGAGACGAGCATCTTTACCGGGCCTTCCAGTATTTTGATAAAGACAACAGTGGGTTTATTACAAGAGATGAACTGGAAACAGCCATGAAGGAATATGGTATGGGTGATGAAGCCACAATAAGGGAAATTATATCCGAAGTTGACACAGATAATGATGGTAGAATCAATTATGAAGAATTTTGTACAATGATGAGGAGTGGAACTCAACAACAAGGAGGCAAGTTATTCTAA 1533 0.4116 MGCCQSRKRSEPEHIGYNHTRGAGVHNHKNHEPFVNPSHQPYQLPEKHAPPAAAPKTPWKPAPSPKRVHKSDAHTILGKPFEDVREFYTLGKELGRGQFGVTYLCTENSTGLQYACKSISKRKLTSKSDKEDMKREIQIMQHLSGQPNIVEFKGAYEDKQSVHVVMELCAGGELFDRIIAKGHYSERAAASICRQIDDKALLKATDFGLSVFIEEGKVYRDIVGSAYYVAPEVLRRNYGKEIDIWSAGVMLYILLSGVPPFWAESEKGIFDAILEGQIDFHSHPWPTISTSAKDLIRKMLIQDPKKRITATQVLEHPWLKEGGNAPDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSEEEIQGLKAMFTNMDTDKSGTITYEELRAGLQRLGSKLTEAEVRQLMDAADVDGNGTIDYIEFITATMHRHRLERDEHLYRAFQYFDKDNSGFITRDELETAMKEYGMGDEATIREIISEVDTDNDGRINYEEFCTMMRSGTQQQGGKLF. 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00325 510 ProSiteProfiles EF-hand calcium-binding domain profile. 362 397 IPR002048 GO:0005509
Seca7g00325 510 ProSiteProfiles EF-hand calcium-binding domain profile. 434 469 IPR002048 GO:0005509
Seca7g00325 510 SUPERFAMILY Protein kinase-like (PK-like) 72 341 IPR011009 -
Seca7g00325 510 ProSiteProfiles EF-hand calcium-binding domain profile. 398 433 IPR002048 GO:0005509
Seca7g00325 510 SMART efh_1 402 430 IPR002048 GO:0005509
Seca7g00325 510 SMART efh_1 366 394 IPR002048 GO:0005509
Seca7g00325 510 SMART efh_1 473 501 IPR002048 GO:0005509
Seca7g00325 510 SMART efh_1 438 466 IPR002048 GO:0005509
Seca7g00325 510 Pfam EF-hand domain pair 367 427 IPR002048 GO:0005509
Seca7g00325 510 Pfam EF-hand domain pair 437 499 IPR002048 GO:0005509
Seca7g00325 510 SUPERFAMILY EF-hand 358 498 IPR011992 -
Seca7g00325 510 ProSitePatterns EF-hand calcium-binding domain. 447 459 IPR018247 -
Seca7g00325 510 Coils Coil 384 404 - -
Seca7g00325 510 Gene3D Phosphorylase Kinase; domain 1 90 173 - -
Seca7g00325 510 ProSiteProfiles EF-hand calcium-binding domain profile. 470 504 IPR002048 GO:0005509
Seca7g00325 510 CDD EFh_PI-PLC 367 500 - -
Seca7g00325 510 FunFam Calcium-dependent protein kinase 1 90 173 - -
Seca7g00325 510 Pfam Protein kinase domain 196 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g00325 510 PANTHER SERINE/THREONINE-PROTEIN KINASE 199 494 - -
Seca7g00325 510 CDD STKc_CAMK 87 318 - -
Seca7g00325 510 ProSitePatterns EF-hand calcium-binding domain. 411 423 IPR018247 -
Seca7g00325 510 MobiDBLite consensus disorder prediction 1 74 - -
Seca7g00325 510 FunFam Calcium-dependent protein kinase SK5 229 324 - -
Seca7g00325 510 ProSitePatterns Protein kinases ATP-binding region signature. 94 117 IPR017441 GO:0005524
Seca7g00325 510 ProSitePatterns EF-hand calcium-binding domain. 375 387 IPR018247 -
Seca7g00325 510 FunFam Calcium-dependent protein kinase 1 327 502 - -
Seca7g00325 510 Gene3D - 331 504 - -
Seca7g00325 510 ProSitePatterns EF-hand calcium-binding domain. 482 494 IPR018247 -
Seca7g00325 510 ProSiteProfiles Protein kinase domain profile. 88 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g00325 510 Gene3D Transferase(Phosphotransferase) domain 1 174 330 - -
Seca7g00325 510 CDD EFh 441 499 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00325 Seca-Chr7 3313084 3318602 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00325 1 510 EF-hand Containing Proteins AT3G20410 69.853 0.0 763
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca7g00325 Pkinase 9.1e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00325 K13412 - gmx:100794852 874.389