Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00324 ATGAGACATGGTGTGCACAATCACAAGAACCATGAACCTTTTGTCAACCAATCAAAAGCCCCTTCTCATCAAACTTACCAATCACCTGAGAAATTTTCTTCAGCACCTCAAAAACCTGTTCATAGGTTAGATATAATTCTTGGGAAGCCATTTGAGGATGTTAGGAAATTCTATACACTTGGGACAGAATTGGGAAGAGGCAAATTTGGGGTGACTTATCTCTGCATTGAGAAATCAACTGGCTTGCAATATGCTTGCAAGTCCATTTCAAAGAGAAGCAATGTTAATAAGGAGGATATAAAGAGGGAGATTCAAATTATGCAGCATTTGAGTGGACAACCCAACATTGTTGATTTCAAAGGTGCTTATGAGGATAAACAATCTGTTCATGTTATTATGGAGCTTTGCTCAGGTGGTCAACTTTATGATAGGATTATTGCCAAGGGGCACTATAGTGAAAGGGATGCTGCTTCAATATGTATAGAAATAGTTAATGCTATCCATATTTGCCATTCTATGTGTGTGATGCATAGGGATCTGAAGCCAGAGAATTTCTTATTTTCCAGTAAGGATGACAAGGCACTCCTCAAGGCCACAGATTTTGGCTTGTCTGCCTTCATTGAAGAAGGAAAGGTGTATCAAGATTTAGTTGGCAGTCCTTATTATGTGGCTCCAGAAGTTTTACGTCATAAATATGGGAAGGAAGTGGATATATGGAGTGCAGGAGTTATATTGTATATCTTACTTAGTGGTGTGCCTCCATTTTGGGGAGACACGACAAAGGAAATATTTGGTGCCATTTTGAAATGTCATATTGATTTTGAAAGTCATCCATGGCCAACCATATCAAACAGTGCTAAGGACCTTATTAGGAAGATGCTTACACAGGATCCAAAGAAACGCATTACCTCTGCTCAGATTCTAGAGCACCCCTGGATTAAAGAAGGTGAAAATGCTTCTGACAAGCCAACAGATAATGATGAGGAGTGGATCCCAACAGCGAAGCAAGCTTTTCTAAATCAACGGTTTCACTAG 1035 0.3952 MRHGVHNHKNHEPFVNQSKAPSHQTYQSPEKFSSAPQKPVHRLDIILGKPFEDVRKFYTLGTELGRGKFGVTYLCIEKSTGLQYACKSISKRSNVNKEDIKREIQIMQHLSGQPNIVDFKGAYEDKQSVHVIMELCSGGQLYDRIIAKGHYSERDAASICIEIVNAIHICHSMCVMHRDLKPENFLFSSKDDKALLKATDFGLSAFIEEGKVYQDLVGSPYYVAPEVLRHKYGKEVDIWSAGVILYILLSGVPPFWGDTTKEIFGAILKCHIDFESHPWPTISNSAKDLIRKMLTQDPKKRITSAQILEHPWIKEGENASDKPTDNDEEWIPTAKQAFLNQRFH. 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00324 344 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Seca7g00324 344 Gene3D Phosphorylase Kinase; domain 1 60 141 - -
Seca7g00324 344 Gene3D Transferase(Phosphotransferase) domain 1 142 342 - -
Seca7g00324 344 ProSitePatterns Protein kinases ATP-binding region signature. 64 87 IPR017441 GO:0005524
Seca7g00324 344 FunFam calcium-dependent protein kinase 1 141 320 - -
Seca7g00324 344 MobiDBLite consensus disorder prediction 14 34 - -
Seca7g00324 344 Pfam Protein kinase domain 58 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g00324 344 PANTHER SERINE/THREONINE-PROTEIN KINASE 53 336 - -
Seca7g00324 344 ProSiteProfiles Protein kinase domain profile. 58 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g00324 344 CDD STKc_CAMK 57 312 - -
Seca7g00324 344 FunFam Calcium-dependent protein kinase 1 60 140 - -
Seca7g00324 344 SMART serkin_6 58 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g00324 344 MobiDBLite consensus disorder prediction 1 37 - -
Seca7g00324 344 SUPERFAMILY Protein kinase-like (PK-like) 43 322 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00324 Seca-Chr7 3309915 3312212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00324 23 326 EF-hand Containing Proteins AT1G50700 67.619 2.03e-162 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca7g00324 Pkinase 2.9e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00324 K13412 - gmx:100798651 499.975