Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00310 ATGATTTCTGGTAGGTGTGCAGCTTGCAAGAGTCAGAGAAGAAGGTGCCCTTCAGATTGCATTTTCTCTCCATATTTCCCTGCCAATGATCCTCAAAGATTTGCTTATGTTCACAGAATATATGGTGGTAGCAATGTTGGAAAAATGCTTCAGCAAATTAGTCCCTATTTACGTGAACAAGCTGCAAATTCTATGTATTTAGAAGCACAATGTAGGATTGAAGACCCTGTTTATGGGTGTGTTGGGATTATCTCTAAATTGCATCAACAAATCCACAATACAGAAGTTGAGCTAGCCAAAATCCAAACTCAAATTGCTTATCACAAGCTCATCCAAAATCCACAGGTTGAAGCTGAAGAATCAAACTTCAATGTCTTGCCACCACAAAGCAACAGCATGGGGCAGTTTCAGTGGCCAAGTCAAGCTCCTTGGTTCAATTAA 441 0.4014 MISGRCAACKSQRRRCPSDCIFSPYFPANDPQRFAYVHRIYGGSNVGKMLQQISPYLREQAANSMYLEAQCRIEDPVYGCVGIISKLHQQIHNTEVELAKIQTQIAYHKLIQNPQVEAEESNFNVLPPQSNSMGQFQWPSQAPWFN. 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00310 146 Coils Coil 84 104 - -
Seca7g00310 146 Pfam Lateral organ boundaries (LOB) domain 5 102 IPR004883 -
Seca7g00310 146 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 117 - -
Seca7g00310 146 ProSiteProfiles LOB domain profile. 4 105 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00310 Seca-Chr7 3223230 3223808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00310 1 123 AS2 family AT3G26660 56.911 2.11e-46 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca7g00310 LOB 9.6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00310 - - gmx:100790640 232.646