Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00288 ATGGATCTGGAGGTGGTTGGGAGGCACGCCATGCTGTTCGACGACGACGGCATGGCGGCGTTCGTGAACTCAGCGGAAGCTCTGGTAGAGTGGAACTCCCTCTCCATCGATCGCTACGATGTTCGCCACCTTCTCTCTGGTCCCCTTCCTCCTCGCCTCAAGCGCCGCCCTTTTCAACCTGAAGCTGACCTCGATTATGAACGTTATCTCGATCTCCCTTCATCATCTTCTTCTGACGAACAATCACAAGATAATGATTCAGGTCCAGTGAATTCATCTGGCTATCGAGCTGTAGCATTTTCATATGAAAATCCAAACGTGTCCACAGAGACAAAGGACAATGATACTGAGTCTGGTTTTCATCCTAGCTTTCCAGTACCAGAAAACTTACTCCATAACCTGCCTCCAAATGAGAAGGTGCATCAGATTATTTCAAGGACTGCAATGTTTGTCAGCAAACACGGAAGCCAGTCAGAAATTATTCTGAGGGTGAAACAAGGAGATAATCCAACTTTTGGCTTCCTCATGCCTGACCACCGTCTTCATGCATATTTTAGGTTTCTTGTTGATCATCAAGAACTTCTGAATGATGGTGACTCAAATGTGGACAAGAATAAAAGTCAGGGACTTGATCAAACGGGTGGTGCATTGTCTTTGCTTGGATCTGTCTATGGATCTGGAGAGGATGAGGATGATACAACTGAGAATACTTGTGATTTAGAGAGAAACAAATGTGAGGGAGCTGTTGATGCTGCCAATACTCATGCTTCTCCAGGAATAGAACAGGCTGAATCTTCTTCAGATGCAGCCAAGAAGGATGGAAGCATTTCAAAAAATTCAATACCCTCTTTGAAAGAAAAAGTTCCTGTCATTAAGCGGAATCATTCTGTTAGTACTGTTAAGACAGCTACAGCAGCTAGGGCAAAAACCAGTGATGCCTTGGATTCAGTGTCGAATGCTGTGAATAAGTCACAGACTTCTGTGCCAAGTAATGCTAAGATTGAACTACCTGTTGTTGAACCGCCATCTGACTTAAAGAGAGTTATTGAGAAGATAGTTGAGTTCATCATAAAAAATGGCAAACAATTTGAGGCTGTTCTTGCTGAACAGGATCGTGCTTATGGAAGGTTCCCATTTCTTCTGCCATCTAATCGATATCATACTTACTATCTGAAAGTTCTTCAAACTGCTGAAGAGTCGAAGTTACCAGGCAAGGGCTACCAGAAGCACAATCCTGTGGGTCGTGCAGGGGACAATAATACTGCTGTACATGAAGAAAGTGACAATCTTTCATTTGGATCTATGGGTTCTGATCTACCGAATGATATGGACCGGAAAGAGAAATTCAAGATGATTATTGCCAAGTCAAAGAAGGATGGTCAAGATTCAACTCCCAAAGACAACCAATCTCAAAACACAGTTACCATGGATGCAGCGGCAGCAGCAGCTATTCTTCAGGCTGCCACTAGGGGTATTAAAAATCCTCATTTAGAAATTTTTACCAAGACATCAAGTGGTAGTGGTCAAGGCCTTGGAAGTGATGGTGGGTATTTGTCCAGCTCTGGGAGTCTTTATTCATCTCAACTGCAGGGTTTGCTTGAAAATCCAAATCTGAATTCAGAGGCTAGCGCTTCTGTCCCTGTTGCCAAGGCTATTGCAGAAACTGTAGCTATTGCAGCAGCTGGTGAGGCAGACTCCTCTGAAGCACACATGACTAAAGAGCAGAAGCTTAAGGCAGAGAGATTGAAACGAGCAAAGATGTTTGCAGCCATGATAAAAAGTGGAGCTGGAGCATTAAAAGGTGAACTGCCACGAGCTTTATCAGCTGAGCCACCAGTCTCTGGACTTTCAGGTTCAGATGCCGAGACTGGAAATCTTGTGGGTAAAGAAAGGGAAGGAAGCTCTGTTCCATTCGAAGTTGATAATTCAGATAAAAGTCAAAAGTCTGAGGAGAAGCCTTCGGTTGATAATTCAGATAAAAGTAATGAGTCTGAGGAGAAACTTGGTGATAACAATGAAAGGCGATTGAAAAGAAGGTACCGTTCTAGATCTAGTAAACATGAGGAGGAGGAAGAAGAGGAGGAAGAAAATAGAGAAGATAAAAGGGATCACAAACAATCCAAAAAAAAGCATCGATCTCATCGATCTTCACACAGCAGTCGGGACAGGGACAGGGACAGGTATAAGCACAAGAGAAAGCATTCCTCCTCCAAAGACACGCATTCTTCTTACAGGGGGACTAAGTATGACAGCTCCTCCGATGATGAGCTTCAACACTATAGGCATCATCATAAATATGATAGCTCTTCTGATGAAAAGCATCGCCCTTCTCGACGAAGGCATAGAGAGAGTAGCGTATCAGATCATGAGCATAGACATTCTCGACGTTCACATAAACATTATAGCTCGTCTGATGATGAGCGCAGGCACCGAAGCAGAAATACAAAACATAAGAGCAGATCTCATACTGACAGAGAAACAATCTTGGAGGAGGGGGAGATAGTTAAATCTGATAAGTCACAACTAAGTGAGGCTGGACGTGCTAGCAGGGAGGCTTCTGCCGCAAGGGCACCATCCCAATCTCCTGAAATAACTGATACTAGCTTAGATCTTCTTATAAAGAATACCGGTTGCAACAGAACAACAGAGGAAGATGCAGCATCTGAAACTATGGATGATAATAAGAGAACTGAGGTAGCTTTGGTAGCTGAATTGCACCAGATGAATGCTGAAAATCAACGTTTAAGAGAGTTGGTGGATGAGGTGAACAATAACTACAATGCCTTACACATGCAACTTATCAAGCTAATGCAGAAGCAGCAGGATAACCATAGGATTAACCAAGTCAAAGAGGAGAAAGGTAAGGGAGAAGATGTGGATCCAAGGCCAATTTTAGACATGGGATTTGCTGAAAAGGATGAGAGCAAACTTAGAGAAAGCAAAAGCATGGTTGACTTGATGGATTGCAAGGTGGATTGTGGAAGCAGAGAAAATTCAAAAAGCAGAATGGATCAAGCATTATTTAACAAAGTTCCTAGATTGAGTTCTTTGGGAGACCAAGCATCAGAAACTATGTCAATGATCAAGAAAGCTCGTGTATCAGTTAGAGCAAGATCAGAAACTCCTATGATTGCAGATGGATGTCAATGGAGAAAGTATGGGCAAAAGATGGCAAAAGGGAATCCTTGTCCACGGGCTTATTATCGTTGCACAATGAGTACTGGTTGTCCTGTACGGAAACAAGTACAAAGGTGTGCTGAAGATCGAAGTGTGTTGATCACTACATATGAAGGGCAGCATAACCATCCACTGCCTCCCACTGCACAAGCAATGGCATCCACCACATCTGCAGCTGCCTCAATGCTTCTTTCAGGATCAATGCCAAGCTCAGATGGCCTAATTAATCCATCCATATTACAAACTGCTGCAATTCCCTGTTCACAAAACATGGCAACTCTCTCTGCCTCAGCCCCATTTCCAACCATCACACTTGATCTCACTCAAACTGCTACCAATTCCTCACAGCTTCAAAGGGAACCACAGGGACAACTCAGCCTCCTAACTCCACTTTTGGCTCACAAGTTTATGTCAGCTCCAAAAGTTTTTGGACAAGCCCTTTGTGATCAAACTAATAAGCTCTCTGCCTTCAATGAGTCTCAGGGCATAGACAGTAACACAGCTTCATCATATGCTGACACATTAAATGCAGCCACGGCTGCTATAACTGCAGACCCAAATTTCACTGCAGCTCTTGTGGCTGCTATTACATCTATGATGGGAAGTTCACATCCAAACAACAATAATGCATAA 3810 0.4341 MDLEVVGRHAMLFDDDGMAAFVNSAEALVEWNSLSIDRYDVRHLLSGPLPPRLKRRPFQPEADLDYERYLDLPSSSSSDEQSQDNDSGPVNSSGYRAVAFSYENPNVSTETKDNDTESGFHPSFPVPENLLHNLPPNEKVHQIISRTAMFVSKHGSQSEIILRVKQGDNPTFGFLMPDHRLHAYFRFLVDHQELLNDGDSNVDKNKSQGLDQTGGALSLLGSVYGSGEDEDDTTENTCDLERNKCEGAVDAANTHASPGIEQAESSSDAAKKDGSISKNSIPSLKEKVPVIKRNHSVSTVKTATAARAKTSDALDSVSNAVNKSQTSVPSNAKIELPVVEPPSDLKRVIEKIVEFIIKNGKQFEAVLAEQDRAYGRFPFLLPSNRYHTYYLKVLQTAEESKLPGKGYQKHNPVGRAGDNNTAVHEESDNLSFGSMGSDLPNDMDRKEKFKMIIAKSKKDGQDSTPKDNQSQNTVTMDAAAAAAILQAATRGIKNPHLEIFTKTSSGSGQGLGSDGGYLSSSGSLYSSQLQGLLENPNLNSEASASVPVAKAIAETVAIAAAGEADSSEAHMTKEQKLKAERLKRAKMFAAMIKSGAGALKGELPRALSAEPPVSGLSGSDAETGNLVGKEREGSSVPFEVDNSDKSQKSEEKPSVDNSDKSNESEEKLGDNNERRLKRRYRSRSSKHEEEEEEEEENREDKRDHKQSKKKHRSHRSSHSSRDRDRDRYKHKRKHSSSKDTHSSYRGTKYDSSSDDELQHYRHHHKYDSSSDEKHRPSRRRHRESSVSDHEHRHSRRSHKHYSSSDDERRHRSRNTKHKSRSHTDRETILEEGEIVKSDKSQLSEAGRASREASAARAPSQSPEITDTSLDLLIKNTGCNRTTEEDAASETMDDNKRTEVALVAELHQMNAENQRLRELVDEVNNNYNALHMQLIKLMQKQQDNHRINQVKEEKGKGEDVDPRPILDMGFAEKDESKLRESKSMVDLMDCKVDCGSRENSKSRMDQALFNKVPRLSSLGDQASETMSMIKKARVSVRARSETPMIADGCQWRKYGQKMAKGNPCPRAYYRCTMSTGCPVRKQVQRCAEDRSVLITTYEGQHNHPLPPTAQAMASTTSAAASMLLSGSMPSSDGLINPSILQTAAIPCSQNMATLSASAPFPTITLDLTQTATNSSQLQREPQGQLSLLTPLLAHKFMSAPKVFGQALCDQTNKLSAFNESQGIDSNTASSYADTLNAATAAITADPNFTAALVAAITSMMGSSHPNNNNA. 1270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00288 1269 MobiDBLite consensus disorder prediction 739 791 - -
Seca7g00288 1269 Coils Coil 677 710 - -
Seca7g00288 1269 Coils Coil 905 939 - -
Seca7g00288 1269 MobiDBLite consensus disorder prediction 608 868 - -
Seca7g00288 1269 SMART WRKY_cls 1044 1104 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca7g00288 1269 ProSiteProfiles WRKY domain profile. 1039 1105 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca7g00288 1269 MobiDBLite consensus disorder prediction 258 280 - -
Seca7g00288 1269 Pfam Alternative splicing regulator 2 103 IPR019147 -
Seca7g00288 1269 MobiDBLite consensus disorder prediction 819 845 - -
Seca7g00288 1269 SMART DRY_EERY_2 1 106 IPR019147 -
Seca7g00288 1269 SUPERFAMILY Surp module (SWAP domain) 327 395 IPR035967 GO:0003723|GO:0006396
Seca7g00288 1269 SUPERFAMILY WRKY DNA-binding domain 1037 1105 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca7g00288 1269 Gene3D Surp module 136 191 IPR035967 GO:0003723|GO:0006396
Seca7g00288 1269 PANTHER SPLICING FACTOR SUPPRESSOR OF WHITE APRICOT 2 763 IPR040397 -
Seca7g00288 1269 FunFam Splicing factor, suppressor of white-apricot 332 404 - -
Seca7g00288 1269 Gene3D Surp module 335 402 IPR035967 GO:0003723|GO:0006396
Seca7g00288 1269 MobiDBLite consensus disorder prediction 854 868 - -
Seca7g00288 1269 MobiDBLite consensus disorder prediction 254 280 - -
Seca7g00288 1269 Gene3D WRKY domain 1029 1106 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca7g00288 1269 ProSiteProfiles SURP motif repeat profile. 143 185 IPR000061 GO:0003723|GO:0006396
Seca7g00288 1269 SUPERFAMILY Surp module (SWAP domain) 120 190 IPR035967 GO:0003723|GO:0006396
Seca7g00288 1269 ProSiteProfiles SURP motif repeat profile. 348 390 IPR000061 GO:0003723|GO:0006396
Seca7g00288 1269 MobiDBLite consensus disorder prediction 403 439 - -
Seca7g00288 1269 FunFam probable WRKY transcription factor 31 1029 1106 - -
Seca7g00288 1269 Pfam Surp module 347 395 IPR000061 GO:0003723|GO:0006396
Seca7g00288 1269 Pfam Surp module 142 190 IPR000061 GO:0003723|GO:0006396
Seca7g00288 1269 MobiDBLite consensus disorder prediction 704 718 - -
Seca7g00288 1269 MobiDBLite consensus disorder prediction 71 94 - -
Seca7g00288 1269 Pfam WRKY DNA -binding domain 1046 1103 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca7g00288 1269 SMART surpneu2 141 194 IPR000061 GO:0003723|GO:0006396
Seca7g00288 1269 SMART surpneu2 346 399 IPR000061 GO:0003723|GO:0006396
Seca7g00288 1269 MobiDBLite consensus disorder prediction 634 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00288 Seca-Chr7 3030428 3041592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00288 865 1263 WRKY Transcription Factor Family AT1G62300 47.806 3.90e-96 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca7g00288 DRY_EERY 7.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00288 - - tpra:123920903 1075.08