Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00280 ATGAGGAAGGGCAACAGAGGAGGAGCCACGGCGGCGGCGGCGATGGATGTTAACGGATCCGGGTCGAGGACAATATTAAAAGAGCCTCGTTACCGTGGCGTGAGGAAGAGACCATGGGGGAGGTTCGCGGCGGAGATCAGAGACCCGATTAAGAAAGCTAGGGTTTGGCTTGGAACCTTTGATTCTGCAGAGGAAGCTGCTAGAGCCTATGACGCCGCCGCACGCACCCTTCGTGGACCCAAAGCAAAGACCAATTTCCCTCTCTCACCTTTCTGCTATCACCACCAACACCCCACCGTTGATCCTTTTTTCTACGCCGCCGGTAACGGTTTCCAAGACCACCACCACATGAACAACCCACAGAGACCAACCTCTAGTGGCATGAGCAGCACCGTTGAGTCCTTCAGTGGTCCCCGCCCTCCCTCCGCCGTCAAGCCCTCGCCGCCGGCCGCCACTCGCCGGTATCCCAGGACACCGCCGGTTGTCCCTGAAGATTGCCACAGTGACTGCGATTCGTCATCCTCCGTGGTAGAGGACGGAGACGACAACATCGTTTCGTCGTCGTTTCGAACGCCGTTGCCGTTTGATCTAAACGCACCGCCGTTTGATGTTGGTGCTGATGTGGCCGCCGGTGATGATGAACTTCGCTGCACTGCGCTATGTCTCTGA 669 0.577 MRKGNRGGATAAAAMDVNGSGSRTILKEPRYRGVRKRPWGRFAAEIRDPIKKARVWLGTFDSAEEAARAYDAAARTLRGPKAKTNFPLSPFCYHHQHPTVDPFFYAAGNGFQDHHHMNNPQRPTSSGMSSTVESFSGPRPPSAVKPSPPAATRRYPRTPPVVPEDCHSDCDSSSSVVEDGDDNIVSSSFRTPLPFDLNAPPFDVGADVAAGDDELRCTALCL. 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00280 222 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Seca7g00280 222 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Seca7g00280 222 Pfam AP2 domain 29 79 IPR001471 GO:0003700|GO:0006355
Seca7g00280 222 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Seca7g00280 222 CDD AP2 29 89 IPR001471 GO:0003700|GO:0006355
Seca7g00280 222 SUPERFAMILY DNA-binding domain 30 89 IPR016177 GO:0003677
Seca7g00280 222 MobiDBLite consensus disorder prediction 114 183 - -
Seca7g00280 222 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 20 183 - -
Seca7g00280 222 FunFam Ethylene-responsive transcription factor 2 30 88 - -
Seca7g00280 222 MobiDBLite consensus disorder prediction 114 137 - -
Seca7g00280 222 MobiDBLite consensus disorder prediction 141 156 - -
Seca7g00280 222 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Seca7g00280 222 Gene3D AP2/ERF domain 30 89 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00280 Seca-Chr7 2938630 2939298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00280 1 222 AP2-EREBP Transcription Factor Family AT3G20310 57.600 3.10e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca7g00280 AP2 6.7e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00280 K09286 - gmx:100820249 282.337