Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00271 ATGGATTGTGGCGGGAAACAAGTTGCAAAAACCATCACCGTTGATCAGCATGGCAAAGGAGAATTCAAGACAATTCAAGCTTCCGTTGATTCTATAAAGAGCCAAAATGATCAATGGATTAAGATTCATATAAACTCTGGCACATACAAAGAAATGGTTTCTATTCCTATAGAAAAGCCATGCATCATTTTGGAAGGAGCTGGTAGGGAGAACACAATCATTACTTATGGTGATCACCAATCAATATCAAATAGCGCTACATTCACTTCATCTCCACCTAATGTGGTTGTAAGTGGCATCACCTTTAAGAAATACAAAAATGGAATTGAACCAGCAGTGGCAGCTAGTGTATCTGGAGACAAATGTGCCTTCTTTAGTTGTAGTTTCATGGGTTATCAAGACACCTTGCTTGATTCAGAGGGACGCCATTATTATAAAGGTTGCTACATACAAGGTGAAGTGGACTTTATTTTTGGTTCTGGTCAATCATATTACGAGAATTGCGCGATCAATGCCACACAGGGGAATTCTCTACCCTCGGGTTTTGTTACAGCCCAAGGTAGGAATTCATCAAATGACCCAAATGGTTTTGTTTTTTATGGTGGTTCCATTGATGGGAATGGTAAAGTGAATCTAGGAAGAGCATGGGGCCCTTACTCAAGAGTTATATTTCATAGAACAACTTTTTCTTCAGTGGTAACCTTAGAAGGATGGAATGCTTGGAGCTTCATAGGCCACGAGAGTAACTTCATGTATGCAGAAGTTAATTGTACAGGAGAAGGGAGCAATACTTCAAAGCGTCCCCCTTGGGTGAAGAAGGAAGCCACAGATTGTGGTGGGAATCATGTTGCAGATACCATCATTGTTGATAAACTTGGCAATGGAGCATTCCAAACGATTCAAGCTGCCATTGATTCTTCTATAGACAGTAGCAATGATCAATGGCTTAAGATTCACATAAATCCCGGCACATACGTGGAAAAAGTTATCATTCCTTTAGAAAGGCCATGCATGATTTTAGAAGGAGACGATAGTGAGAGCACGATCATTACTTATGGTGATCACCAAGCAACAAACACAAGCGCTACATTCATTTCATTTCCACCTAATGTGATTGTGAGTCACATTACCTTCAAGAATAGGGCAGGTGAAATCAAACCAGCAGTGGCAGCAAGTATATATGGAGACAAATCTTTCTTCTTTAATTGTAGCTTTAAGGGTTATCAAGACACTCTATTTGATGTATTAGGACGCCATTACTTTAAAGATTGCTACATTGAAGGTGAAGTGGACTTTATTTTTGGTGATGCCCAATCTTATTATGAGAATTGTTTGATCAACGCCACACAATTGGAAAATAAACCTTCAGGTTTTATCACAGCCCAAAATCGAAATTCAACAAAGGATCCGGGTGGTTTTGTTTTTGCTGGAGGCTCAGTTGTTGGGATTGGTGAAGTGAATTTAGGAAGAGCATGGGGTCCTTATTCAAGAGTTATATTTCAAAATACATATCTTTCTGGAGTGGTAACCCCTGAAGGATGGAATGCTTGGAACTATGCTGGGCACGAGGAAAATTTCATGTATGTAGAATTCAATTGCACGGGAGCTGGGAGTGATACCTCAATGCGTCCCCCTTGGGTGAGGACTGAGTTGAGTCAAAAAGAGCTAAATGAATATTCTTTATCATCTTTCATTAATCAAGATCATTGGCTCGACAAAATACCAACTATATGA 1734 0.3968 MDCGGKQVAKTITVDQHGKGEFKTIQASVDSIKSQNDQWIKIHINSGTYKEMVSIPIEKPCIILEGAGRENTIITYGDHQSISNSATFTSSPPNVVVSGITFKKYKNGIEPAVAASVSGDKCAFFSCSFMGYQDTLLDSEGRHYYKGCYIQGEVDFIFGSGQSYYENCAINATQGNSLPSGFVTAQGRNSSNDPNGFVFYGGSIDGNGKVNLGRAWGPYSRVIFHRTTFSSVVTLEGWNAWSFIGHESNFMYAEVNCTGEGSNTSKRPPWVKKEATDCGGNHVADTIIVDKLGNGAFQTIQAAIDSSIDSSNDQWLKIHINPGTYVEKVIIPLERPCMILEGDDSESTIITYGDHQATNTSATFISFPPNVIVSHITFKNRAGEIKPAVAASIYGDKSFFFNCSFKGYQDTLFDVLGRHYFKDCYIEGEVDFIFGDAQSYYENCLINATQLENKPSGFITAQNRNSTKDPGGFVFAGGSVVGIGEVNLGRAWGPYSRVIFQNTYLSGVVTPEGWNAWNYAGHEENFMYVEFNCTGAGSDTSMRPPWVRTELSQKELNEYSLSSFINQDHWLDKIPTI. 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00271 577 Gene3D - 5 280 IPR012334 -
Seca7g00271 577 Gene3D - 281 576 IPR012334 -
Seca7g00271 577 SUPERFAMILY Pectin lyase-like 283 574 IPR011050 -
Seca7g00271 577 FunFam Pectinesterase 281 575 - -
Seca7g00271 577 SUPERFAMILY Pectin lyase-like 8 271 IPR011050 -
Seca7g00271 577 Pfam Pectinesterase 12 271 IPR000070 GO:0030599|GO:0042545
Seca7g00271 577 Pfam Pectinesterase 287 567 IPR000070 GO:0030599|GO:0042545
Seca7g00271 577 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 283 572 - -
Seca7g00271 577 FunFam Pectinesterase 6 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00271 Seca-Chr7 2874340 2889331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00271 277 523 Carbohydrate Esterase AT2G19150 47.656 1.50e-69 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00271 - - mcha:111023848 525.013