Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00264 ATGAACGAGGTCCAAGAACCGGCGCCGGATCCTCAACCGGCGGTTGAGAACGGCGGAGGTGCGGAACTGGATGTTGACGAGCGGTGCAGTAAGAAGGCGAAGGTGGAGAGTGCATCGGAGGCTGAATTGAAGAGAGTGGCGGAGATTGTGTTGGTTTTGTCGACGATGGCGACGATGCGAGGGGGAAGGAAGCCTACTGATGTGGAGGTTGAGCTTATGAGAGAGGCTCGGACCAAGCTTGCACACCTCTGTCAGGGGCTAGCTCCCAAGGATATTGTGGCCAAGGAAGCTATTGACACTGTCATCGAAGATCTTGGCTTGAACGCTAAGATTAAGGACCAGAGGTTAGGGTTTCGAGCTCCCAAGATGTCCATTGCCGAGAGGTATTCGCATGCTAAGTGGAAGATGGAGGAATCAAAGAAGTTTTCTGCACCTTCTACACCATTTACATCTCAGCCCTTGCAAACAAGTATAGCTGGAACAGTTGACAACCGTGTGCCAACACATGCTGTTCGAATGGTTGTGTCTGATAAACCAAGCCACGCAGCAATCTCTTCTACAGGAACTGTAGTGCCTATTCCTCCCCATGTCACTGCAGGATCTTCTGTGGCATTGCAATATCAAACAACCAACAATGAAGTGAGACCACCTGTGGTTTCTGGTGTAATGCCTAGCAGTCACTTGGGGAGAAATTCAACTTCCTTAGCATTGCCTAAAGTTGATGGAGGATCAAATGGGTCTCCTTATGTGCTGCAAATCCAAGCAAACCAACCATTGGTGAATGCCCCAACATGGTCAATACAGACTCAACCTGCATCATTAGCCAGAAGTGCATCAGAAAACAAGGTCCTTACTCTGAACTCAGCCAAGGTTGAAGTAGCAGCTGATGTAACCGTATCAAGGGCAGGGCCTCAAATAACAACAGATCAGAGCTTTAGACCATTTATTACTCAAACAGCTCCTGGAAATTTGTCTACTATGCACCAGCCATTGCAGGGCATGAACATGGCTCAACCTCCTTTGATTCCTAGTCATGCTGACATTGCAAAGATTGTCCAGAAATTGTTACTGCCAAAGCTTCCTGACCATCCCACATGGACTCCTCCATCAAGGGATTATATGAATAAGGCTTTGACATGTCAAATGTGTGAGCTCACTGTCAATGAGGTTGATACCGTACTTCTCTGTGATGCTTGTGAAAAGGGATTTCACTTGAAGTGCCTGCAGCCATCAGTCTTAAGAGGAATTCATAATAGAGTTGATTGGCACTGCATGAGGTGCTTAAGTTTAAGCGGTGGAAAGCCTTTGCCTCCAAAATATGGTCGTGTCATGAGATCCTCAAACACACCACCAAAATTGCCCTCTAATACAGGTGGTATTCAGCCATCTTCAGAGAAGAAAGAAGGGAGCTTAGATCCAAAGGTCAGCCCTCAGATGTTAACAACAAATGGGAGCTCTCTTCCAACTGTTTCCAGCGGCAATCACAATGTTGAGCTGTCATCTGACTCAAAGACCCCAGATATGAAAGATGTACAGGGTATCAGCATTTCATCTAGCATTGAAACTATTGGTGAGAAGCCTGATCCAAACATCTGTATGAAATCCCTTAGTGCAGCTGCTAGTCCTTCCACTGGCTTGCCAGGTGAAAGTTCTTCTCAACAAATAAATTCTGAGGCTTCGATCTGTAAAGAGACTTCAGAACCTGAAACTCTTCCTAAATTATCTGAGCCGGCTAAATGTGAAAATTTACAATCACCACAAGATTTCCAAGTTGAACAGACAGTGTCACAAGACAATGCTGACGTATCATCAGATAAACAAGTTAACAGTAGTTTTATGATTAGTAACCCAAATGAATCTCATGGAGGAGAAAATTCAACTTATGATATCAAGCAAGATGAATCATCAGATAAACAAGTTAACAGTAGTTTTATGATTAGTAACCAAAATGAATCTCATGGAGGAGAAAATTTAACTTATAATATCAAGCAAGATGACCTAGATGTTGCACAAGAAAATTTTGTTGGAGGTTCTGGAACTATTACTGAAGGTAGACAGCACTCTGCATTGTCCTCAGATAGCTCACACATTGTAGAATGGATTGGTGATGTTGTACAGCTTGTAGATGAGAAAAAGTTTTACCAATCTTGTTCTGTAGATGGAGTAACATATAGGCTGCAGGGTCATGCTCTTTTCCCATCCACCCATGGCAAAGAAACACCTTCTAAACTTCAGGCAAACTTATTCCTATTTAATTTTCAGTCTATGTGGGAAGATTGCAAAACTGGGTTAAAGTGGGTGAAGGTGACAAAGTGCTACTTTCCTGATGATTTGCCAGGGAACGTCGGTCATCCTTGTATATCTGAAGTTAATGAGGTTTATGAGTCTAATAGTGATAGAATTGAAATGGCCAGCTCTATTCGAGGCCCATGTGAAGTCCTGCCATCTGATAAATTTAAACAAGAAAATGACAGGCGATGTCAGTTTGGAATTGAGGAAAGTGATTTTGTACAGCCCATTTTCCTTTGCAGGTTTGTTTCCTTATTCATCTATCATTCTAGGCAGTGTGCTATTTTGTTTTATTTTATGCCTGTTTCATTCAAATTATACAATTCTCCATATATGTAA 2628 0.43 MNEVQEPAPDPQPAVENGGGAELDVDERCSKKAKVESASEAELKRVAEIVLVLSTMATMRGGRKPTDVEVELMREARTKLAHLCQGLAPKDIVAKEAIDTVIEDLGLNAKIKDQRLGFRAPKMSIAERYSHAKWKMEESKKFSAPSTPFTSQPLQTSIAGTVDNRVPTHAVRMVVSDKPSHAAISSTGTVVPIPPHVTAGSSVALQYQTTNNEVRPPVVSGVMPSSHLGRNSTSLALPKVDGGSNGSPYVLQIQANQPLVNAPTWSIQTQPASLARSASENKVLTLNSAKVEVAADVTVSRAGPQITTDQSFRPFITQTAPGNLSTMHQPLQGMNMAQPPLIPSHADIAKIVQKLLLPKLPDHPTWTPPSRDYMNKALTCQMCELTVNEVDTVLLCDACEKGFHLKCLQPSVLRGIHNRVDWHCMRCLSLSGGKPLPPKYGRVMRSSNTPPKLPSNTGGIQPSSEKKEGSLDPKVSPQMLTTNGSSLPTVSSGNHNVELSSDSKTPDMKDVQGISISSSIETIGEKPDPNICMKSLSAAASPSTGLPGESSSQQINSEASICKETSEPETLPKLSEPAKCENLQSPQDFQVEQTVSQDNADVSSDKQVNSSFMISNPNESHGGENSTYDIKQDESSDKQVNSSFMISNQNESHGGENLTYNIKQDDLDVAQENFVGGSGTITEGRQHSALSSDSSHIVEWIGDVVQLVDEKKFYQSCSVDGVTYRLQGHALFPSTHGKETPSKLQANLFLFNFQSMWEDCKTGLKWVKVTKCYFPDDLPGNVGHPCISEVNEVYESNSDRIEMASSIRGPCEVLPSDKFKQENDRRCQFGIEESDFVQPIFLCRFVSLFIYHSRQCAILFYFMPVSFKLYNSPYM. 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00264 875 MobiDBLite consensus disorder prediction 438 510 - -
Seca7g00264 875 SUPERFAMILY FYVE/PHD zinc finger 370 435 IPR011011 -
Seca7g00264 875 ProSiteProfiles Zinc finger PHD-type profile. 377 430 IPR019787 -
Seca7g00264 875 MobiDBLite consensus disorder prediction 593 640 - -
Seca7g00264 875 MobiDBLite consensus disorder prediction 448 464 - -
Seca7g00264 875 MobiDBLite consensus disorder prediction 593 625 - -
Seca7g00264 875 SMART PHD_3 379 428 IPR001965 -
Seca7g00264 875 Gene3D - 691 855 IPR043151 -
Seca7g00264 875 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 5 845 - -
Seca7g00264 875 MobiDBLite consensus disorder prediction 538 564 - -
Seca7g00264 875 MobiDBLite consensus disorder prediction 475 510 - -
Seca7g00264 875 ProSitePatterns Zinc finger PHD-type signature. 380 427 IPR019786 -
Seca7g00264 875 Pfam PHD-finger 380 428 IPR019787 -
Seca7g00264 875 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 369 441 IPR013083 -
Seca7g00264 875 MobiDBLite consensus disorder prediction 1 28 - -
Seca7g00264 875 MobiDBLite consensus disorder prediction 538 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00264 Seca-Chr7 2789741 2794252 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca7g00264 PHD 2e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00264 - - gmx:100807139 1220.3