Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00256 ATGAAAAGGCCATTGGTAACTTCAGATGATGAGACTGAGACCGAGGTCCAGTCCATCTCTGTCTCAAATTACCATCTCGAAGATGATGATGACATGCCTGTATCTTTCTCTGTGTTGCCGATTCAATGGAGTGATTCCGAGAGTTTTGATGGCCACAAAGAGCAGGTATTGAATCTACACGGTTCCGTTGACAATGGGCTGCAGAAGTATTTTAACCAAGTTACTGCATGGAAATTTGATCTTTCCCGTGTGAAACCCGAGATATCCTTGCTATCAAAGGATGGAAAGTGGATCAAGCTTCTGAAGCCAAGGAAGAGCTTTCAGGATACTGTAAGGACCATTTTAATCACCATTCGCTTCTTGCATTTTGTGAAGAAAAATCCCCGATTGTCTGCCACATCTGTTTGGAAGAATTTGTGTGAGGATAAGGAGTTGAGCTCTTATGGGTTTAAGCCTTCACAAAAGGACTTAGTGGACCATATGCCTTTAATTGGTGAAGCTGCCAAAAGGGATGCTGTCTTAGCTAAATCCAAGGTGTGTATTTCCTTTTTCAAAGACACTGCACGACCTGGAGTTATTGCTGATGATATTGACAGTGATATATTAGATGAAGCTAATGAAGAGTCAGAAGCAGAGGATGAGTCATCTAACTCTGTCTGTGCATTTTGTGAAAATGGTGGTGGACTTTTGTGTTGTGAAGGAGCATGCATGAGGTCATTTCATGCTACTAAGGAGGATGGTATAGAGTCTATTTGTGATTCTCTTGGTTTAACCCAGAAGGAAGTTGATAAGATTGAGAACTTTTATTGTAAAAATTGTGAATATCATCAACACCAATGCTTTGCGTGTGGTGAGCTGGGATCTTCTGATAAAGTTAAGGGTGCTGAGGTCTTTAAGTGTGCTTCTACAAACTGTGGTCATTTTTATCATCCACGTTGTGTTGCACACTTGCTTACTCGGGTAATTAAGCTTGTTGCAAAGGAACTTGAGAGAAGTATTGCTGATGGGGATCCTTTTACTTGCCCTGTTCATTTTTGCCGTGTCTGTAAAAAAATGGAAAATAAGATGGAACCTGAGTTGCAATTTGCTGTTTGTGGACGGTGTCCAAAGTCTTATCATCGAAGATGTTTGCCAAGAGAAATTGGTTTAGAAAACAGAAAAGATGGAGATATTATACGAAGGGCTTGGGAAGGTCTTTTACCAAACAATCGCATTCTTATATATTGCTTAAATCATGAGGTTGATGGTGAACTTGGGACTCCTATAAGAGATCATATAAAATTCCCCCGTACTAAAGCTACTGTTCGAGAAATTATCACCGCTAGTAAAAGGATGAAAGTCATGAAACCTGCAACCAAAGAGAGAGTTATATTAAAGAAGAACAATACTGACTTAGATAATTCATCTGGCAAAAGCGCTGCTACAAGATCTACAGTGACTGGAAAACTGTCCTCTGGGAAAGTTGGTAGCAAGAAGTCTGAGAAGATGATTTCTGGTTCAAGTATCTCAAGAAAACCAAAATCAAATAAAACATCAAGGTGTTTGTATGAAAACAAGAGGTCAAACTCAAAGAAATTTGAAATGCCTGAGCAAATCGAGCATGACAATCAGGATGATGATGTAGCTAATGAGACCCTGTCTGTCAAGCCTGTTAATGTATTGCCTCCATTAGATGCTGATTCAGAGAGGAGTTTGTTGGCTTTGTGGGAAGAAGCTAGATCATCAATTACATTGGAGAGTGTGTTAGAAAATCTCACTTTTGCTTCTACTCATACTCAGTCATCGAAAAATGCTGTGGAGAAGAACATTCCAATGGGGAACCTGAAAGGCTCAGTTGATGCTGTTCGAATGCCTCTAAGGAAGCTAGGGGGCAGATGCAGCACTCAGGATGTAGAAACTGTTTGTGACCCTGATGTTCTGAAACAGATATTTAAGTGTAAGGTTATTGATAAACTACATTGGTATGTTCAGAATGGTGATACAATTGTGAACTTCTGTTGTGGTGCTAACGATTTTGGCATCCTTATGAAGAAAAAGCTTGAGGAAACTGGGAAGGAATGTTCATACAAAACCTATGACCTACTTCCAACAAAGAATAGTCTTAGTTTTGAAAGGAAGGATTGGACAACTGTCCAACCAACGGAGTTGCCTACAGGATCACAGCTGATCATGGGCCTCAACCTTCCTTTTGGGCTTAAGGCAGCTTTGGCTAACAAGTTTATAGATAAGGCTCTTGGGTTTAAACCAAAGCTGCTAATTCTTATAGCACCACCGGAGACACAGAGGCTTAATAAAAATCCCTTGTCGTACGATCTTATATGGGAGGATGAGAATTTTCTATCAGGCGTGTCATTTTATCTGCCTGGGTCAGTTGATGTAAGGCCACCTCTGCTCTCCCTTTGGAGCCATCCTGACTGGACTACTAAACACATGTTCATAGCCCAGGAGCATAGTCACATCTACAGCCAGCATGAAACATTAATGATGGACATGTTGGCTGCTGATCATACTATGGATGGTGATTACAGTGAAAACCTCATGCCGAGTCATGATTTCTTAGAGTCACCTGATGATGAAGAAAATCAAGCACCTCATGTCAGGATGAGTTCTTTGGGTTGTGAACCTCCTGCATTTTGTAGAAGTGGCACTTTTGAACATAGTGTGCCCCGAACTGGTGATGTGCTGCAGGGATTCGCACCTGGTCCTAACCATGCATATGCACGCCAGCATTCAGCAGGTTGGCTCATTGAGTAG 2754 0.4118 MKRPLVTSDDETETEVQSISVSNYHLEDDDDMPVSFSVLPIQWSDSESFDGHKEQVLNLHGSVDNGLQKYFNQVTAWKFDLSRVKPEISLLSKDGKWIKLLKPRKSFQDTVRTILITIRFLHFVKKNPRLSATSVWKNLCEDKELSSYGFKPSQKDLVDHMPLIGEAAKRDAVLAKSKVCISFFKDTARPGVIADDIDSDILDEANEESEAEDESSNSVCAFCENGGGLLCCEGACMRSFHATKEDGIESICDSLGLTQKEVDKIENFYCKNCEYHQHQCFACGELGSSDKVKGAEVFKCASTNCGHFYHPRCVAHLLTRVIKLVAKELERSIADGDPFTCPVHFCRVCKKMENKMEPELQFAVCGRCPKSYHRRCLPREIGLENRKDGDIIRRAWEGLLPNNRILIYCLNHEVDGELGTPIRDHIKFPRTKATVREIITASKRMKVMKPATKERVILKKNNTDLDNSSGKSAATRSTVTGKLSSGKVGSKKSEKMISGSSISRKPKSNKTSRCLYENKRSNSKKFEMPEQIEHDNQDDDVANETLSVKPVNVLPPLDADSERSLLALWEEARSSITLESVLENLTFASTHTQSSKNAVEKNIPMGNLKGSVDAVRMPLRKLGGRCSTQDVETVCDPDVLKQIFKCKVIDKLHWYVQNGDTIVNFCCGANDFGILMKKKLEETGKECSYKTYDLLPTKNSLSFERKDWTTVQPTELPTGSQLIMGLNLPFGLKAALANKFIDKALGFKPKLLILIAPPETQRLNKNPLSYDLIWEDENFLSGVSFYLPGSVDVRPPLLSLWSHPDWTTKHMFIAQEHSHIYSQHETLMMDMLAADHTMDGDYSENLMPSHDFLESPDDEENQAPHVRMSSLGCEPPAFCRSGTFEHSVPRTGDVLQGFAPGPNHAYARQHSAGWLIE. 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00256 917 CDD PHD2_NSD 279 344 - -
Seca7g00256 917 MobiDBLite consensus disorder prediction 510 524 - -
Seca7g00256 917 MobiDBLite consensus disorder prediction 458 524 - -
Seca7g00256 917 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 215 275 IPR013083 -
Seca7g00256 917 MobiDBLite consensus disorder prediction 494 509 - -
Seca7g00256 917 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 13 827 - -
Seca7g00256 917 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 367 IPR013083 -
Seca7g00256 917 SMART PHD_3 346 413 IPR001965 -
Seca7g00256 917 SMART PHD_3 219 274 IPR001965 -
Seca7g00256 917 SMART PHD_3 279 345 IPR001965 -
Seca7g00256 917 Pfam Cytosine specific DNA methyltransferase replication foci domain 20 139 IPR022702 -
Seca7g00256 917 MobiDBLite consensus disorder prediction 462 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00256 Seca-Chr7 2743324 2752442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00256 208 320 PHD Transcription Factor Family AT3G14980 29.204 6.70e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00256 - - aprc:113845862 1108.98