Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00236 ATGCCGAGTGTTAACCCTGACCCATCTGACAAAGATTCTGAGCCATTTGTTGAAACCGATCCAACTGGTAGATATGGTAGATACAGTGAGTTACTTGGAAGTGGTGCTGTGAAAAAAGTGTACCGTGCATTTGATCAAGAAGAAGGAATAGAGGTGGCTTGGAACCAAGTGAAGCTTAGGAACTTCTCTGATGACCCTGCCATGGTGGATAGGCTTTACTCTGAAGTGAGGTTACTCAGAAGCTTAACAAACAAAAACATCATTGCCCTTTACAGTGTGTGGAGGGATGAGCAACATGACACACTCAATTCCATCACTGAGGTATGTACCAGTGGGAATTTGAGGGAGTACAGGAAAAAACACAAGCATGTTTCCATCAAGGCCTTGAAGAAGTGGTCTAAGCAGATTTTGAAAGGGTTGAATTATTTGCATACTCATGATCCTTGTATCATCCATAGAGATCTCAATTGCAGCAATGTGTTTGTCAATGGGAATATTGGCCAGGTTAAGATTGGTGACTTGGGTTTGGCAGCAATTGTGGGCAAGAACCATTGTGCACACTCCATTCTTGGTACACCAGAATTTATGGCTCCAGAGTTATATGATGAAGACTACACAGAATTAGTGGACATATACTCATTTGGGATGTGTGTGTTAGAGATGGTGACACTGGAGATTCCATATAGTGAGTGTGACAATGTTGCAAAGATATACAAGAAGGTGTCTTCAGGGGTGAGACCTGCAGCATTGAACAAGGTTAAAGATCCTGAGGTTAAGGCCTTCATTGAGAAGTGCCTTGCTCAGCCAAGGGCAAGACCTTCTGCTGCTGAGCTTCTCAAAGATCCTTTCTTTGATGACATTATTGATGATGACGAAAATGATGACTCTGCTGGTTCTTGCTAG 903 0.4275 MPSVNPDPSDKDSEPFVETDPTGRYGRYSELLGSGAVKKVYRAFDQEEGIEVAWNQVKLRNFSDDPAMVDRLYSEVRLLRSLTNKNIIALYSVWRDEQHDTLNSITEVCTSGNLREYRKKHKHVSIKALKKWSKQILKGLNYLHTHDPCIIHRDLNCSNVFVNGNIGQVKIGDLGLAAIVGKNHCAHSILGTPEFMAPELYDEDYTELVDIYSFGMCVLEMVTLEIPYSECDNVAKIYKKVSSGVRPAALNKVKDPEVKAFIEKCLAQPRARPSAAELLKDPFFDDIIDDDENDDSAGSC. 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00236 300 ProSiteProfiles Protein kinase domain profile. 26 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g00236 300 FunFam Probable serine/threonine-protein kinase WNK1 10 107 - -
Seca7g00236 300 CDD STKc_WNK 24 280 - -
Seca7g00236 300 FunFam probable serine/threonine-protein kinase WNK9 109 290 - -
Seca7g00236 300 Gene3D Phosphorylase Kinase; domain 1 10 107 - -
Seca7g00236 300 Gene3D Transferase(Phosphotransferase) domain 1 109 289 - -
Seca7g00236 300 MobiDBLite consensus disorder prediction 1 22 - -
Seca7g00236 300 PIRSF TyrPK_CSF1-R 27 131 - -
Seca7g00236 300 PIRSF TyrPK_CSF1-R 82 295 - -
Seca7g00236 300 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 11 286 - -
Seca7g00236 300 Pfam Protein kinase domain 29 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g00236 300 SUPERFAMILY Protein kinase-like (PK-like) 21 285 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00236 Seca-Chr7 2615455 2617538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00236 5 288 MAP Kinase Kinase Kinase AT5G55560 84.155 0.0 512
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Seca7g00236 Pkinase 4.3e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00236 K08867 - gmx:100816060 538.11