Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00232 ATGGACGCTGCTGCTACCAACTCCGGCGAACCCCACTCGAGTTCGGAGCTCCGGGTAGATGGGGCACATCATGATCCAAATCGAACCGGGTCGGGTCAAAATTCAACCGCAAGGTACAAGCTTTTGTCGCCGGCGAAGCTTCCGATCTCGAGGTCGCCGTGCATCACGATTCCTCCGGGGCTGAGTCCGACGTCGTTTTTGGAGTCTCCTGTTCTACTTTCCAACATGAAGGTGGAGCCTTCACCCACTACAGGGTCCCTTCCTAAGCCTCACCAAACAGTTCATGGTTCTATGGCTTCTACTGCATCCGCTACATTTCCTGTAACCAGTGCATGTTTTAATACCAATACTGTTGATGACAGAAGATCAAGCTTCTTTGAGTTTAAACCACACAGTAGATCAAATATGGCTCCTGCAGACTTCAACAACCATGTAAGTCAACAATCTACTCAAGTAGAAGGTCCAGGAAAAGCTCAATCATTTGCCTCTTCACCATTAGTTGAAAATGATATTGCTGTTCCATCTAATGAATTGAGCCTATCATCACCTGTTCAAATGGTTAGTTCTGGGGCTACTGCTCCTCTTGATGTTGATTTGGATGAATTTAACCACAAAGGCAACACAACTACTGGGCTTCAAACATCACATGCTGAAGTTAGATGCAGTGGACTTTCGGTTGCAACCGATAAATCATCTAATGATGGATACAATTGGCGAAAATATGGGCAGAAACATGTTAAAGGAAGTGAATTTCCACGCAGCTACTACAAATGCACACATCCTAACTGTGAAGTGAAAAAACTTTTTGAGCGCTCTCATGATGGTCAAATCACTGAGATAATTTACAAGGGAACACATGATCATCCTAAACCTCAACCAAGCAGCCGAAACTCTTCTGGTACAATTATGTCTATGCAAGGAGAGAGATCTTTGGCTGGCCGAGATGAGAAAGCATCCAATATGTATAATCAGTCGTCTCATGCCGCTGAGCCCAACAGTACTCCAGAGCTATCGCCTGTAACAACAAATGATGATAGTTTAGAGGGTTCCGGATTTGTGACAAACAGGACAAATGACGAGGTTGATGAAGAAGATCCTTTCTCAAAGAGAAGAAGAATGGAACTTGGAAATGCTGAAATCATTCCTGTAGTTAAGCCTATCCGGGAGCCACGGGTTGTTGTACAAACTGTGAGTGAAGTTGATATATTGGATGATGGGTACCGCTGGCGTAAATATGGACAGAAGGTGGTGAGGGGAAATCCTAACCCAAGGAGTTATTACAAATGCACAAATGCTGGTTGCCCTGTAAGGAAACATGTGGAGAGGGCATCTCATGATCCAAAAGCAGTAATAACCACATATGAGGGTAAACACAATCATGATGTACCTGCTGCAAGGAGTAGCAGCCATGACATGGCAGGACCTGCAGCAGCAGCAGCAGGAGGAGGGCAGACAAGAATTAAGTTTGAAGAAAGTGATACCATTAGCCTTGACCTTGGGATGGGAATTAGCTCAGCTGCTGATAGTAGTAGATCAAATGGGCAAGGGAAAATGCTTCTCTCTGAATTTGGGGACAGTCAAACTCACACTACTAGCAATTCCAGTTTCAAGTTTGTTCATACTACCCCAGCTCAGGTATACTATGGTGTTCTAAATAACAGCACAAATCAATATGGTTCTAGAGAAAATAGGAGTGATGGTCCACCTTTAAACCATTCCTCCTATCCTTGCTCACAGAACATGGGAAGAATACTAATGGGTCCATGA 1767 0.4437 MDAAATNSGEPHSSSELRVDGAHHDPNRTGSGQNSTARYKLLSPAKLPISRSPCITIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLPKPHQTVHGSMASTASATFPVTSACFNTNTVDDRRSSFFEFKPHSRSNMAPADFNNHVSQQSTQVEGPGKAQSFASSPLVENDIAVPSNELSLSSPVQMVSSGATAPLDVDLDEFNHKGNTTTGLQTSHAEVRCSGLSVATDKSSNDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPSSRNSSGTIMSMQGERSLAGRDEKASNMYNQSSHAAEPNSTPELSPVTTNDDSLEGSGFVTNRTNDEVDEEDPFSKRRRMELGNAEIIPVVKPIREPRVVVQTVSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPAARSSSHDMAGPAAAAAGGGQTRIKFEESDTISLDLGMGISSAADSSRSNGQGKMLLSEFGDSQTHTTSNSSFKFVHTTPAQVYYGVLNNSTNQYGSRENRSDGPPLNHSSYPCSQNMGRILMGP. 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00232 588 MobiDBLite consensus disorder prediction 282 367 - -
Seca7g00232 588 ProSiteProfiles WRKY domain profile. 398 463 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca7g00232 588 SUPERFAMILY WRKY DNA-binding domain 229 291 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca7g00232 588 Pfam WRKY DNA -binding domain 233 289 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca7g00232 588 Pfam WRKY DNA -binding domain 404 460 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca7g00232 588 SUPERFAMILY WRKY DNA-binding domain 395 463 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca7g00232 588 MobiDBLite consensus disorder prediction 291 306 - -
Seca7g00232 588 MobiDBLite consensus disorder prediction 317 356 - -
Seca7g00232 588 MobiDBLite consensus disorder prediction 555 579 - -
Seca7g00232 588 MobiDBLite consensus disorder prediction 1 38 - -
Seca7g00232 588 MobiDBLite consensus disorder prediction 462 484 - -
Seca7g00232 588 Gene3D WRKY domain 222 292 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca7g00232 588 Gene3D WRKY domain 388 464 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca7g00232 588 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 68 501 IPR044810 GO:0003700
Seca7g00232 588 SMART WRKY_cls 403 462 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca7g00232 588 SMART WRKY_cls 232 290 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca7g00232 588 ProSiteProfiles WRKY domain profile. 227 291 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca7g00232 588 FunFam WRKY transcription factor 222 292 - -
Seca7g00232 588 FunFam WRKY transcription factor 33 390 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00232 Seca-Chr7 2556762 2562928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00232 42 588 WRKY Transcription Factor Family AT4G26640 55.872 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca7g00232 WRKY 1.5e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00232 - - gmx:100816583 990.719