Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00227 ATGGCTACCATTTTCTCCCTTTATCCTTACAATCCCTTGCTCTATGTTCCAACTCCTTCTCCTCCCACTTCTTCTTCTTCGTTTTGGAGCTTTGGGAAACGGAGCAGGTTGGCGGTGCTTGCGGCGCATTCCAATCCGAGGATTGTTAAGACCAACAGAAAGTCAAGGTATGGTCGAGCCTTTTCGCCGTATGACAGCGATGAAGACGATGAAGAAATGGACGACGACGAAGATGAAGACGAAGAGGACGATGATTGGCTCTCTGATGACGAGTTTGCTGAGCCTACTGACTCTGATGTTAACAAGAGATTTAAGTCACGGACAGTTAAAGAAAAAGATAGACAGCAGGAAAAGGAGTGGGGTGGGAGGTCTTTTAACAATGGACAAAGCACTAGAATGCCCAAAAGTGAGGAAGTTGCATCCTTACGACAAAATGACAGTGGAAAGGTACCAAATGGTGATACATCTGGCAGAAATTTAAAGGAGAAAAAATATCCTAGGTTGTCCGAAGAGATTCTTTTGGATGTGAAATGGTTACCCCTTCTTGATTACTTAAGCACCTTTGGGATTAAAGAATCACACTTTCTCCAAATGTATGAGAGGCACATGCCATCACTTCAAATTAATGTATGTTCTGCACAGGAAAGGTTAGAGTACTTAATGAGTGTTGGCGTTAAACATAGAGATGTAAGAAGAATCCTTTTGAGGCAGCCACAAATTCTAGAGTATACAGTTGAGAACAATCTGAAGTCTCGTGTTGCTTTCTTGAAGGGCTTGGGCATACATAATTCCAAAATAGGGCAAATCATTGCTGCTGCTCCATCCTTGTTTTCTTATAGTGTTGAGAATTCATTAAAACCAACAGTAAGATATTTAATTGAGGAAGTTGGTATCAAGGAAAAAGATTTGGGTAAAGTCATTCAGCTGAGTCCCCAAATTCTTGTCCAGCGTATTGATATTTCATGGAATACTCGATATATGTTTCTTACCAAAGAGTTGGGTGCACCTAAAGATAGCGTTGTGAAGATGGTGACTAAACACCCCCAACTTCTCCATTACAGCATAGATGATGGATTGCTACCAAGAATAAATTTCCTAAGGAGCATAGGAATGAAAAATTCAGACATTTTGAAAGTCTTGACTAGCCTTACTCAGGTGCTATCTTTGTCCTTGGAGGAGAATCTAAAGCCCAAGTATTTGTACTTGGTAAATGAACTCAACAATGAGGTGCAATCCTTGACCAAATACCCAATGTATCTTAGCTTGTCTTTGGACCAGAGAATTCGTCCTCGTCACAGGTTCTTGGTTTCCCTAAAGAAAGCTCCAAAAGGACCATTTCCTCTTGGATCTCTTGTTCCAACTGATGAATGCTTTTGTCAACAGTGGGCTGGAACTAGTTTGGATAAATATTTGGCATTTCGTCAAAAATTATTACTCAAAAAGTTTGCTGAGAAATATGAAAGAAAAATGTGA 1473 0.4033 MATIFSLYPYNPLLYVPTPSPPTSSSSFWSFGKRSRLAVLAAHSNPRIVKTNRKSRYGRAFSPYDSDEDDEEMDDDEDEDEEDDDWLSDDEFAEPTDSDVNKRFKSRTVKEKDRQQEKEWGGRSFNNGQSTRMPKSEEVASLRQNDSGKVPNGDTSGRNLKEKKYPRLSEEILLDVKWLPLLDYLSTFGIKESHFLQMYERHMPSLQINVCSAQERLEYLMSVGVKHRDVRRILLRQPQILEYTVENNLKSRVAFLKGLGIHNSKIGQIIAAAPSLFSYSVENSLKPTVRYLIEEVGIKEKDLGKVIQLSPQILVQRIDISWNTRYMFLTKELGAPKDSVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMKNSDILKVLTSLTQVLSLSLEENLKPKYLYLVNELNNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLGSLVPTDECFCQQWAGTSLDKYLAFRQKLLLKKFAEKYERKM. 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00227 490 Gene3D Transcription termination factor 3, mitochondrial 241 477 IPR038538 -
Seca7g00227 490 MobiDBLite consensus disorder prediction 121 154 - -
Seca7g00227 490 SMART mt_12 304 336 IPR003690 GO:0003690|GO:0006355
Seca7g00227 490 SMART mt_12 410 441 IPR003690 GO:0003690|GO:0006355
Seca7g00227 490 SMART mt_12 341 372 IPR003690 GO:0003690|GO:0006355
Seca7g00227 490 SMART mt_12 231 262 IPR003690 GO:0003690|GO:0006355
Seca7g00227 490 SMART mt_12 377 409 IPR003690 GO:0003690|GO:0006355
Seca7g00227 490 SMART mt_12 267 299 IPR003690 GO:0003690|GO:0006355
Seca7g00227 490 MobiDBLite consensus disorder prediction 95 120 - -
Seca7g00227 490 PANTHER CGI-12 PROTEIN-RELATED 179 461 IPR003690 GO:0003690|GO:0006355
Seca7g00227 490 FunFam Transcription termination factor MTERF9, chloroplastic 242 477 - -
Seca7g00227 490 MobiDBLite consensus disorder prediction 43 162 - -
Seca7g00227 490 MobiDBLite consensus disorder prediction 65 94 - -
Seca7g00227 490 Pfam mTERF 183 256 IPR003690 GO:0003690|GO:0006355
Seca7g00227 490 Pfam mTERF 245 437 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00227 Seca-Chr7 2528811 2532107 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca7g00227 mTERF 1e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00227 K15032 - gmx:102660933 754.207