Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00208 ATGCTGAGTTTCTTATCCTTAATGATGAAGCGGTTGTCTTCTAGAGTTGTAGTCTTTGTTGTTCTGTTTTTCCTGATGTGGGTTCAGGTGGATTTAGCAGAAGGTGGCCATGGTGGTGTTAGGAATTACATTAGTTGGGAAGATTTGTTGGTAGATGGAAGTTTGGCCGTGAAGTCCAATAACGAGGTTCGAGTTTTTGTGGTTGATCAACATGGCAAGGGACATTCCAAAACTGTTCAAGGAGCAGTGGATATGGTTCCAGATCATAACAGACAGAGGGTCAAAATATACATTTATCCAGGACTTTACAGAGAAAAAGTGCTTGTGCCAAATACCAAGCCTTATATATCATTTATAGGAAAAAGAAATGAAACAGCAAGTGCTGTAATTTCTTGGAACAGTAAGTCATCTGACAGAGGTCCAAATGGCCAAGCATTAGGCACCTATGGTTCAGCAACTGTAGCAGTTGAATCAGATTATTTTTGTGCAACTGAGATCACCTTTGAGAACACAGTGGTTGCAGCACCTGGTGGAGAAGGAATGCAAGCAGTGGCATTGAGGGTAGATAGTGATAGAGCCATGTTCTATAGAGTTAAGATTAAAGGAACACAGGACACTCTCTTGGACAACACAGGAACTCATTACTACTACAGGTGTCTCATCCAAGGAAAAGTTGATTTTATCTTTGGCAGTGCTAAATCACTCTATGAGGTAAGAATAAGAATAATTCTGATAATTGTGAGACTGGTGTCTACTGAACAGAAGTGTCATCTTCAGTCAATAGCTGAGAACTATGGAGCAATTGCAGCACATCACAGGGATTCACCACATGAAGACACAGGCTTTTCTTTTGTAGGGTGTGGTATAAGAGGAACTGGTAGTGTGTACCTTGGCAGAGCATGGGGGAACTATTCAAGAATAATATACTCAAATTGTAATATGGAGGATATTATTAACCCTGAAGGATGGTCAGAATGGAATCATCCAGAAAGAAAAAAGACTGCAGTGTTTGGTGAGTATCAATGCCATGGAAGAGGGGCAGATAGAAGACAAAGGGTGCCTTGGTCAAAATCATTCAGCTATGAGGAAGTAAGGCCTTTCCTGGACAAGAGCTTCATAAATGGAGATCAGTGGCTTAGACTGTAG 1146 0.4101 MLSFLSLMMKRLSSRVVVFVVLFFLMWVQVDLAEGGHGGVRNYISWEDLLVDGSLAVKSNNEVRVFVVDQHGKGHSKTVQGAVDMVPDHNRQRVKIYIYPGLYREKVLVPNTKPYISFIGKRNETASAVISWNSKSSDRGPNGQALGTYGSATVAVESDYFCATEITFENTVVAAPGGEGMQAVALRVDSDRAMFYRVKIKGTQDTLLDNTGTHYYYRCLIQGKVDFIFGSAKSLYEVRIRIILIIVRLVSTEQKCHLQSIAENYGAIAAHHRDSPHEDTGFSFVGCGIRGTGSVYLGRAWGNYSRIIYSNCNMEDIINPEGWSEWNHPERKKTAVFGEYQCHGRGADRRQRVPWSKSFSYEEVRPFLDKSFINGDQWLRL. 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00208 381 Gene3D - 64 381 IPR012334 -
Seca7g00208 381 SUPERFAMILY Pectin lyase-like 65 379 IPR011050 -
Seca7g00208 381 FunFam Pectinesterase 61 381 - -
Seca7g00208 381 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 54 380 - -
Seca7g00208 381 Pfam Pectinesterase 67 376 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00208 Seca-Chr7 2303471 2305646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00208 32 333 Carbohydrate Esterase AT5G55590 56.966 1.17e-127 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00208 K01051 - gmx:100804220 543.117