Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00201 ATGGCCAACAATGGTGTAAAGGAGCCCTTACTGTCAGGATCACTGGATCCTGCAGCTCAAAAAGATAAATGGCAGTTAAAGAAAAGAAGATTGCTCCGTTCTAGAAGTGCACCTCACACAGATCTTGCTCCTCCTGAGACAAATGACAATGAATCAATTCCCCATTCTGAGTCCATATTTAGGAATTTACATCCAAGCTTTAAAAAAGTGGCCATATGCCTTGCAGTCTATTTAGGTATAGGTGCTTTGATCTTCTACATTTTCAGGAACCAGATCAAGGGGCTGAAAACAGACAGATTCCTTGATGCTGTATACTTTACAATTGTGACAATGACCACTGTTGGATATGGAGACCTTGTGCCCAATAGTGACCTTACAAAACTTCTTGCTTGTGCTTTTGTCTTCTCTGGAATGGCATTGGTTGGACTAATCCTAAGCAATGCAGCAGACTACTTGGTTGAGAAACAGGAAGTTTTGCTTGTTAAAGCTATACACATGCGCCAACAAGTTGGTCCAACTGAAATTCTAAAGGAGGTTGAGATCAATAAAACAAGATACAAATTCATTCTGGTCTTTTTCATTCTTTTGATTCTCATTATTGCAGGGACAGTTTTCTTGGTCACTGTTGAGAAATTGGATACTATTGATGCCTTCTACTGTGTTTGTTCTACAATCACAACCCTGGGTTTTGGGGATAAAAGTTTTTCAACTCAAGCAGGAAGAATATTTGCTGTGTTTTGGATATTGACAGGTACTATTTGTTTAGCCTTGTTTTTCCTCTACATTGCTGAGCTAAACACTGAAAGCAAACAAAAAGCACTGGTCAAGTGGGTTCTTGAAAGGAAAATGACCAATTTAGATTTGGAGGCTGCTGATATTGATGACGATGGAACTGTTGGGGCTGCTGAATTTGTAATTTATAAGCTGAAGGAGATGGGGAAGATTAGTCAAGAAGATATATCACTTGTGATGAAGGAGTTTGAAGATCTTGACGTTGATCAGTCTGGTACATTGTCTGTTTCTGATATAACACTTGCTCAGTCATCTTAG 1050 0.3914 MANNGVKEPLLSGSLDPAAQKDKWQLKKRRLLRSRSAPHTDLAPPETNDNESIPHSESIFRNLHPSFKKVAICLAVYLGIGALIFYIFRNQIKGLKTDRFLDAVYFTIVTMTTVGYGDLVPNSDLTKLLACAFVFSGMALVGLILSNAADYLVEKQEVLLVKAIHMRQQVGPTEILKEVEINKTRYKFILVFFILLILIIAGTVFLVTVEKLDTIDAFYCVCSTITTLGFGDKSFSTQAGRIFAVFWILTGTICLALFFLYIAELNTESKQKALVKWVLERKMTNLDLEAADIDDDGTVGAAEFVIYKLKEMGKISQEDISLVMKEFEDLDVDQSGTLSVSDITLAQSS. 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00201 349 SUPERFAMILY Voltage-gated potassium channels 67 168 - -
Seca7g00201 349 Pfam Ion channel 72 153 IPR013099 -
Seca7g00201 349 Pfam Ion channel 194 266 IPR013099 -
Seca7g00201 349 FunFam Calcium-activated outward-rectifying potassium channel 1 64 159 - -
Seca7g00201 349 PRINTS Two pore domain K+ channel signature 226 235 IPR003280 GO:0005267|GO:0016020|GO:0071805
Seca7g00201 349 PRINTS Two pore domain K+ channel signature 109 137 IPR003280 GO:0005267|GO:0016020|GO:0071805
Seca7g00201 349 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 69 321 IPR003280 GO:0005267|GO:0016020|GO:0071805
Seca7g00201 349 ProSitePatterns EF-hand calcium-binding domain. 292 304 IPR018247 -
Seca7g00201 349 Gene3D - 170 277 - -
Seca7g00201 349 MobiDBLite consensus disorder prediction 30 53 - -
Seca7g00201 349 SUPERFAMILY EF-hand 288 344 IPR011992 -
Seca7g00201 349 Gene3D - 64 158 - -
Seca7g00201 349 ProSitePatterns EF-hand calcium-binding domain. 331 343 IPR018247 -
Seca7g00201 349 SUPERFAMILY Voltage-gated potassium channels 181 282 - -
Seca7g00201 349 FunFam Two-pore potassium channel 1 168 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00201 Seca-Chr7 2270507 2273767 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00201 50 349 Ion Channels AT5G55630 65.563 1.37e-146 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00201 K05389 - gmx:100777388 538.495