Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00200 ATGCGAAAATCAGTTCATAATATGATAATAGTAATTAATTATCTCGAAATTAGAAACATGGGATTGGGATCCACTTACACTGAACCAGAAGGTTTCCGAAGACTCAGCAGCAATAACTCATCTTCTCTTCCAGAATCACTTCAAAGCATGGCCAACAATGGTGCAAAGGAGTCCATGCTGTCAGGATCACTGGATCCTGCACCTCAAAAAGATAAATTGCAGTTAAAGAAAAGGAGATTCCTCCGATCTAGAAGTGCACCTCACACAGCTCTTGCACCTCCTCAGACAAATGTCAATGAATCAACTCCCCATTCTAAGTCCATATTTAGGAATTTACATCCAAGCTTTAGAAAAGTGGCCATATGTCTTGCAGTCTATTTAGGTATAGGTGTTTTCATCTTCTACCTTTTCAGGAACCAGATCAAGGGGCTGAAAACAGACAGATTCCTTGATGCTCTATACTTTACAATTGTGACAATGACCACTGTTGGATATGGAGACCTTGTGCCCAATAGTGACCTTACAAAACTTCTTGCTTGTGCTTTTGTTTTCTCTGGAATGGCATTGATTGGACTAATCCTAAGCAAAGCAGCAGACTACTTGGTTGAGAAACAGGAAGTTTTGCTTGTTAAAGCTTTGCACATGCGCCAAAAAGTTGGTCCAACTGAAGTTCTAAAGGAGGTTGAGATCAATAAAACAAGATACAAATTCATTCTGGTCTTTTTCATTCTTTTGATTCTCATTATTGCAGGGACAGTTTTCTTGGTCACTGTTGAGAAATTGGATACTATTGATGCCTTCTACTGTGTTTGTGCTACCATCACAACCCTGGGTTATGGGGATAAAAGTTTCTCAACTCAAGCAGGAAGAATATTTGCTGTGTTTTGGATATTAACAGGTACTATTTGTGTAGCTCTGTTTTTCCTCTACATTGCTGAGCTAAACACTGAAAGCAAACAAAAGGCACTGGTCAAGTGGGTTCTTGAAAGGAAAATGACCAATTTAGATTTGGAGGCTGCTGATCTTGATGGCGATGGGACTGTTGGGGCTGCTGAATTTGTAATTTATAAGCTGAAGGAGATGGGGAAGATTAGTCAAGAAGATATATCACTTGTGATGAAGGAATTTGAAGAGCTTGACGTTGATCAGTCTGGTACATTGTCTGCTTCTGATATAACACTTGCTCAGTCATCTTAG 1197 0.3952 MRKSVHNMIIVINYLEIRNMGLGSTYTEPEGFRRLSSNNSSSLPESLQSMANNGAKESMLSGSLDPAPQKDKLQLKKRRFLRSRSAPHTALAPPQTNVNESTPHSKSIFRNLHPSFRKVAICLAVYLGIGVFIFYLFRNQIKGLKTDRFLDALYFTIVTMTTVGYGDLVPNSDLTKLLACAFVFSGMALIGLILSKAADYLVEKQEVLLVKALHMRQKVGPTEVLKEVEINKTRYKFILVFFILLILIIAGTVFLVTVEKLDTIDAFYCVCATITTLGYGDKSFSTQAGRIFAVFWILTGTICVALFFLYIAELNTESKQKALVKWVLERKMTNLDLEAADLDGDGTVGAAEFVIYKLKEMGKISQEDISLVMKEFEELDVDQSGTLSASDITLAQSS. 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00200 398 PRINTS Two pore domain K+ channel signature 346 355 IPR003280 GO:0005267|GO:0016020|GO:0071805
Seca7g00200 398 PRINTS Two pore domain K+ channel signature 272 300 IPR003280 GO:0005267|GO:0016020|GO:0071805
Seca7g00200 398 Pfam EF hand 337 353 IPR002048 GO:0005509
Seca7g00200 398 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 119 370 IPR003280 GO:0005267|GO:0016020|GO:0071805
Seca7g00200 398 FunFam Calcium-activated outward-rectifying potassium channel 1 113 208 - -
Seca7g00200 398 ProSitePatterns EF-hand calcium-binding domain. 341 353 IPR018247 -
Seca7g00200 398 ProSitePatterns EF-hand calcium-binding domain. 380 392 IPR018247 -
Seca7g00200 398 Gene3D - 113 207 - -
Seca7g00200 398 Pfam Ion channel 243 315 IPR013099 -
Seca7g00200 398 Pfam Ion channel 121 202 IPR013099 -
Seca7g00200 398 SUPERFAMILY EF-hand 333 394 IPR011992 -
Seca7g00200 398 Gene3D - 219 325 - -
Seca7g00200 398 SUPERFAMILY Voltage-gated potassium channels 230 331 - -
Seca7g00200 398 Gene3D - 337 395 - -
Seca7g00200 398 SUPERFAMILY Voltage-gated potassium channels 113 216 - -
Seca7g00200 398 FunFam Two-pore potassium channel 1 217 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00200 Seca-Chr7 2264046 2266895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00200 98 398 Ion Channels AT5G55630 65.347 7.11e-148 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00200 K05389 - gmx:100800137 529.25