Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00189 ATGCCACATTCACACCCTGTTCCATGTGAGGCTTTTGTGTTGTCTGGGTGTGCAAAAGTGGCAGGCCTCTTGGAGGGGGAAGAAAATTCTTTAGGAAACTACAATTCCACCGTGAATCAGGTGGTGCAACCAACTTATTATGTAACTCCCCAAGGCTATAGTCGCTCGGCTGCGCGTGAGAGAGCTCTGCCAGTTACCAATGTGGTAAGAATCATGCGGCAAGTTCTTCCACCACAAGCAAAGATCACCGATGAGTGCAAGGAAGCGATGGTTGAATGTGCAGCTAATTTCATCACCTTCATCACTAAAGAGGCTAGCCGCCAATGCAAAGTTGAGCACCGTAAAACTATCATTGCTGAAGATGTGGTGTGTAATATGAGGAAGTTAGGTTTTGATAACTATGCTGAGGTTTGCAATCGCTTCCTCCAACGATATCGTCAGAATGCAGTTACTCCTTGTGTTCCTACACAAGAACCATCTATTATAGATGATGGTGTGCCACTGCTGCCACCGACTTTTGATGCTCCTAGTTTCCCGGTTGGTCAATACCCATTTCCTGACTCAACAGAAATTGATGGATTTTACGTGGATGAGTCAAGTCGTGGCGACTCAAGCAATGCCAATGTTCACAATGATTCTTTTGCTTATCTCAATCCTGACAATGCTGATAACTGA 675 0.4519 MPHSHPVPCEAFVLSGCAKVAGLLEGEENSLGNYNSTVNQVVQPTYYVTPQGYSRSAARERALPVTNVVRIMRQVLPPQAKITDECKEAMVECAANFITFITKEASRQCKVEHRKTIIAEDVVCNMRKLGFDNYAEVCNRFLQRYRQNAVTPCVPTQEPSIIDDGVPLLPPTFDAPSFPVGQYPFPDSTEIDGFYVDESSRGDSSNANVHNDSFAYLNPDNADN. 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00189 224 SUPERFAMILY Histone-fold 60 148 IPR009072 GO:0046982
Seca7g00189 224 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 51 149 IPR027113 GO:0001228|GO:0006355|GO:0016602
Seca7g00189 224 MobiDBLite consensus disorder prediction 195 224 - -
Seca7g00189 224 Gene3D Histone, subunit A 53 153 IPR009072 GO:0046982
Seca7g00189 224 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Seca7g00189 224 PRINTS CCAAT-binding transcription factor subunit A signature 128 146 - -
Seca7g00189 224 PRINTS CCAAT-binding transcription factor subunit A signature 109 127 - -
Seca7g00189 224 MobiDBLite consensus disorder prediction 199 224 - -
Seca7g00189 224 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 62 122 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00189 Seca-Chr7 2201070 2202134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00189 59 147 CCAAT-HAP3 Transcription Factor Family AT5G47670 51.685 6.75e-29 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Seca7g00189 CBFD_NFYB_HMF 2.7e-16 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00189 K08065 - cit:102619694 121.324