Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00154 ATGTCTAGAACATTAAGGAATCTCTCACTTTCTCCTAAAATCTTCTCCCTCACCTTGTTTCTCTCAATAAACTCTCTTTTCTTTTTATGTTGTTACTCCCTTGATGAACAAGGCCAAGCTCTTGTAGCATGGAAGAACAGTTTAAACAGTACTACAGATGCATTAGCATCTTGGAATCCTTCAAATCCAAGCCCATGCAACTGGTTTGGGGTGCACTGCAACTTACAAGGCCAGGTGGTGGAGATAAACCTCAAATCAGTGAGCTTGCAAGGCTCATTACCTTCAAATTTTCAACCTCTCAGGTCCTTGAAGATTCTTGTCCTCTCATCAACCAACATCACAGGCAGGATTCCAAAAGAAATTGGAGACTATCAAGAGCTCACTGTCATTGATCTCAGTGACAATTTTCTCTTGGGAGAAATCCCAGAAGAAATTTGTAGGCTAAGCAAACTGGAAACTTTAGCTCTCCATACAAACTTTCTTGAAGGCAGTATTCCATCCAACATAGGAGATTTATCAAGTCTTGTGGAGTTGACATTCTATGACAATAAACTGAGTGGTGAAATTCCAAAGAGTGTTGGCTCCTTAAGCAAGCTTCAAGTGTTCAGAGCAGGAGGGAATGCAAACCTTAAGGGTGAGCTTCCATGGGACATTGGAAACTGCACCAACTTGGTCATGTTAGGCCTTGCAGAAACCAGCATTTCTGGGAGTCTTCCTTCTTCAATAGGGATGCTGAAAAATATTCAGACCATAGCCATTTACACAACTAAGTTGTCAGGCTCTATCCCAGAAGAGATTGGGAATTGCAGTGAGTTACAGAACCTGTACTTGTACCAGAACTCAATTTCTGGTTCAATCCCAAGTCAAATTGGAGAGCTCAGCAAGCTTCAGAGTCTACTTCTATGGCAAAACAACTTAGTGGGAGCAATCCCAGAAGAGCTTGGAAGATGCACAGAGCTCACAGTCATAGACTTGTCAGAAAATCTTCTCACAGGTAGCATACCAACTAGTTTTGGACAGCTATCAAATCTCCAAGGGCTTCAGCTGAGTATTAATCAGCTGTCAGGTACTATTCCTCCTGAAATTTCAAATTGCACTTCTCTGACTCAGCTGGAAGTTGACAACAATGCTATTTCTGGTGAGATTCCTCCTGTTATTGGCAACTTGAGAAGCTTGACACTCTTCTTTGCCTGGAAGAACAAGCTAACAGGAAAAATCCCAGATAGTCTTTCGGAGTGCCAAGATCTTCAGGCACTTGATCTGTCTTACAACAACTTAATTGGTCCAATTCCCAAACAACTATTTGGGTTGAGGAATCTCACTAAACTGCTGCTTCTTTCCAATGATTTGTCAGGCTTCATACCTCCTGATATAGGTAACTGCACAAGCCTCTACAGGTTGAGGCTCAATCAGAATAGGCTGGCAGGTACCATTCCATCTGAGATTACCAACTTGAAGAATTTGAATTTTTTGGACATGAGCAGCAATCATCTTGTAGGGGAGATTCCTCCAACACTATCCAGATGCCAAAATCTTGAATTTCTGGACCTCCATTCAAATAGTCTCACTGGTTCAGTTCCAGATAATCTGCCAAAAAGCCTTCAGCTAATTGACCTCTCAGACAACAGGCTAACAGGTGCACTGAGTCATTCCATTGGTTCATTAAATGAATTAACCAAACTCAACTTGGGAAAGAATCAACTCAGTGGAAGAATCCCAGCAGAGATCCTATCTTGCTCCAAGCTACAACTTCTAGACTTGGGAAGCAATAGTTTCTTTGGAGAAATTCCCAAGGAAGTTGGTCAAATTCCTTCACTAGAAATCTTTCTCAATCTTAGCTGTAACCAGTTTTCTGGTGAAATTCCACCTCAGTTCTCTGGTCTTAGAAAACTTGGAGTGCTTGATCTCTCACATAACAAGCTCTCAGGGCATTTAGATGCTCTTTCTAACCTTCAGAATCTTATTTCCTTAAATGTTTCCTACAATGACTTCTCTGGTGAATTGCCTAACACATCATTCTTCAGGAAACTCCCTCTCAGTGATCTCACTGCAAATAATGGTCTCTACATTTCTGGTAGTGAGTTTGTAACTCCAGCTGACAGAATGGAAGCCAAAGGCCATGCCAGATTAGCTATGAAGATTATAATGACCATTCTCATGTGCACCAGTGCTGTACTAGTACTTCTCACAATCCATGTCTTGATTCGTTCTCATATTGCTAACAAAGCACTCATGGGAAATGACAATTGGGTGGTGAGTTTGTATCAAAAGTTTGAATTTTCTATTGATGACATTGTCAGAAATTTGACATCAGCCAATGTGATTGGCACTGGAAGCTCTGGAGTTGTGTATAAGGTAACAATTCCAAATGGTCAAACACTAGCAGTTAAAAGGATGTGGTCATCAGCAGAGTCTGGAGCATTTAGTTCTGAAATTCAAACACTAGGTTCAATCAAACACAAGAATATCATCAAGCTTCTAGGTTGGGGATCCAGTAAGAATTTGAAGCTGCTGTTTTATAACTACCTCCCTAATGGAAGCCTGAGCTCATTACTTCATGGTTCAGGAAAGGAAAAAGCAGAATGGGAAACCAGATATGAAATCATGCTAGGCCTAGCTCAGGCACTTGCATATTTACACCATGATTGTGTGCCTTCTATATTGCATGGAGATGTCAAAGCAATGAATGTGTTATTAGGTCCTGGCTATCATCCTTATCTTGCTGACTTTGGCCTTGCAAGAATTGCAAGTGGAAATGGTGATAATACTAATTCCAAGCCAATTCAAAGACCCCACCTTGCTGGTTCCTATGGATACATGGCTCCTGAACATGCATCAATGCAGCAGATCAGTGAGAAAAGTGATGTGTACAGTTTTGGTGTGGTCCTACTTGAGGTCCTAACAGGAAGGCACCCTTTAGACCCAACTCTGCCTGGGGGTGCACACTTGGTTCAGTGGGTTAGGAACCACTTAGCTAGCAAAGGAGACCCATCTGACATTCTTGACCCAAAGCTGAGAGGAAGGACTGACTCTACTATGCATGAAATGCTACAAACTCTAGCTGTGTCATTTCTATGTGTCAGTACCAAAGCTGAAGACCGTCCAACAATGAAGGACACTGTTGCAATGCTCAGGGAAATTAGACCTGTTGAGGCATCAATGACAGATCCTGATGCATTGAAGGGAGTTTTAACAGCAGATACTAAGAATGTAGTTTCACATGGATCTTCTAACTGTTCCTTTACTTTCTCAAATGACTCAATGTGTTGA 3270 0.4159 MSRTLRNLSLSPKIFSLTLFLSINSLFFLCCYSLDEQGQALVAWKNSLNSTTDALASWNPSNPSPCNWFGVHCNLQGQVVEINLKSVSLQGSLPSNFQPLRSLKILVLSSTNITGRIPKEIGDYQELTVIDLSDNFLLGEIPEEICRLSKLETLALHTNFLEGSIPSNIGDLSSLVELTFYDNKLSGEIPKSVGSLSKLQVFRAGGNANLKGELPWDIGNCTNLVMLGLAETSISGSLPSSIGMLKNIQTIAIYTTKLSGSIPEEIGNCSELQNLYLYQNSISGSIPSQIGELSKLQSLLLWQNNLVGAIPEELGRCTELTVIDLSENLLTGSIPTSFGQLSNLQGLQLSINQLSGTIPPEISNCTSLTQLEVDNNAISGEIPPVIGNLRSLTLFFAWKNKLTGKIPDSLSECQDLQALDLSYNNLIGPIPKQLFGLRNLTKLLLLSNDLSGFIPPDIGNCTSLYRLRLNQNRLAGTIPSEITNLKNLNFLDMSSNHLVGEIPPTLSRCQNLEFLDLHSNSLTGSVPDNLPKSLQLIDLSDNRLTGALSHSIGSLNELTKLNLGKNQLSGRIPAEILSCSKLQLLDLGSNSFFGEIPKEVGQIPSLEIFLNLSCNQFSGEIPPQFSGLRKLGVLDLSHNKLSGHLDALSNLQNLISLNVSYNDFSGELPNTSFFRKLPLSDLTANNGLYISGSEFVTPADRMEAKGHARLAMKIIMTILMCTSAVLVLLTIHVLIRSHIANKALMGNDNWVVSLYQKFEFSIDDIVRNLTSANVIGTGSSGVVYKVTIPNGQTLAVKRMWSSAESGAFSSEIQTLGSIKHKNIIKLLGWGSSKNLKLLFYNYLPNGSLSSLLHGSGKEKAEWETRYEIMLGLAQALAYLHHDCVPSILHGDVKAMNVLLGPGYHPYLADFGLARIASGNGDNTNSKPIQRPHLAGSYGYMAPEHASMQQISEKSDVYSFGVVLLEVLTGRHPLDPTLPGGAHLVQWVRNHLASKGDPSDILDPKLRGRTDSTMHEMLQTLAVSFLCVSTKAEDRPTMKDTVAMLREIRPVEASMTDPDALKGVLTADTKNVVSHGSSNCSFTFSNDSMC. 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00154 1089 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 843 1061 - -
Seca7g00154 1089 ProSiteProfiles Protein kinase domain profile. 769 1051 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g00154 1089 Gene3D Ribonuclease Inhibitor 610 694 IPR032675 -
Seca7g00154 1089 FunFam Leucine-rich receptor-like protein kinase family protein 34 195 - -
Seca7g00154 1089 ProSitePatterns Serine/Threonine protein kinases active-site signature. 887 899 IPR008271 GO:0004672|GO:0006468
Seca7g00154 1089 SUPERFAMILY L domain-like 33 307 - -
Seca7g00154 1089 ProSiteProfiles Leucine-rich repeat profile. 630 652 IPR001611 GO:0005515
Seca7g00154 1089 SUPERFAMILY Protein kinase-like (PK-like) 756 1055 IPR011009 -
Seca7g00154 1089 Pfam Leucine rich repeat 319 378 IPR001611 GO:0005515
Seca7g00154 1089 Pfam Leucine rich repeat 610 664 IPR001611 GO:0005515
Seca7g00154 1089 Gene3D Ribonuclease Inhibitor 370 609 IPR032675 -
Seca7g00154 1089 Gene3D Ribonuclease Inhibitor 289 369 IPR032675 -
Seca7g00154 1089 Gene3D Phosphorylase Kinase; domain 1 738 842 - -
Seca7g00154 1089 ProSitePatterns Protein kinases ATP-binding region signature. 775 797 IPR017441 GO:0005524
Seca7g00154 1089 FunFam Putative LRR receptor-like serine/threonine-protein kinase 754 842 - -
Seca7g00154 1089 SUPERFAMILY RNI-like 286 660 - -
Seca7g00154 1089 SMART serkin_6 769 1017 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g00154 1089 Gene3D Ribonuclease Inhibitor 36 186 IPR032675 -
Seca7g00154 1089 Gene3D Transferase(Phosphotransferase) domain 1 843 1063 - -
Seca7g00154 1089 Pfam Leucine rich repeat N-terminal domain 35 74 IPR013210 -
Seca7g00154 1089 FunFam Putative LRR receptor-like serine/threonine-protein kinase 609 694 - -
Seca7g00154 1089 FunFam Leucine-rich receptor-like protein kinase family protein 336 608 - -
Seca7g00154 1089 Pfam Protein kinase domain 772 1039 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g00154 1089 SMART LRR_sd22_2 172 198 - -
Seca7g00154 1089 SMART LRR_sd22_2 628 653 - -
Seca7g00154 1089 SMART LRR_sd22_2 317 346 - -
Seca7g00154 1089 SMART LRR_sd22_2 269 295 - -
Seca7g00154 1089 SMART LRR_sd22_2 531 557 - -
Seca7g00154 1089 SMART LRR_sd22_2 485 514 - -
Seca7g00154 1089 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 310 1039 - -
Seca7g00154 1089 Gene3D Ribonuclease Inhibitor 187 288 IPR032675 -
Seca7g00154 1089 SMART LRR_typ_2 437 461 IPR003591 -
Seca7g00154 1089 SMART LRR_typ_2 485 509 IPR003591 -
Seca7g00154 1089 SMART LRR_typ_2 628 650 IPR003591 -
Seca7g00154 1089 SMART LRR_typ_2 293 317 IPR003591 -
Seca7g00154 1089 SMART LRR_typ_2 341 365 IPR003591 -
Seca7g00154 1089 SMART LRR_typ_2 148 172 IPR003591 -
Seca7g00154 1089 SMART LRR_typ_2 651 675 IPR003591 -
Seca7g00154 1089 SMART LRR_typ_2 100 124 IPR003591 -
Seca7g00154 1089 SMART LRR_typ_2 510 533 IPR003591 -
Seca7g00154 1089 SMART LRR_typ_2 555 579 IPR003591 -
Seca7g00154 1089 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 208 333 - -
Seca7g00154 1089 PRINTS Leucine-rich repeat signature 628 641 - -
Seca7g00154 1089 PRINTS Leucine-rich repeat signature 534 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00154 Seca-Chr7 1895639 1899393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00154 31 1088 Receptor kinase-like Gene Family AT5G56040 66.045 0.0 1412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca7g00154 Pkinase 1.1e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00154 - - gmx:100813139 1820.44