Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00118 ATGTCTTCTTCTTCTTCTACTTCTTCTTCTTCTTCTTCTTCTCATGATCATGATGATGATGCTGCATCCAATGTTGCTCCTCCTACCACAAGGAGGAGAAACACTGATTTTGAAGGCCCTTCTTCCTCTCGTCAACGTGCTATGAATGAGGTCTGGCCTGAACCTGTTGTGGAATTATTAGCCACCCATGTTGCTATCCATGCTGCTCACTACCATGGTCCTCTTGCTGCTGCTTCTGCACTTGCCATTGTTTTTCAGGTTTGTTCAACATGGCGAGAAGTGTCACGCTCTGAACTGCTTTGGCAGCGGCTCACACGACAGATCTGGCGCGTGACACATCGACTGAGGGACACGTGGCATCTGGAGTATATCTTCTGGCATCGAACGGCCAGGAACTTCAGCACTGGGAGACACTCATTTGTGGTGCCTGATTTTGATCCTTCCGACACGCGCGGAGATCACCACCACCTCCCAACACTTATTTGCAGATGCCTCACACTCTCAGACACTCACCTTGCTTGTGGTTTTGTGGATGGCACTGTTCGTTTATTTGACTTGGAGACTAACCTCCATGTTAGCACCTTTTGGTCTAGCCATGGTCATCTTTTTGGCCCATTTTCACTTGCTGTATCAGGCGTTGTTATTACCGACTCAGTTCTCACCTTTGCTAGACTGGATGGTGACATCTATGTGGCAATCATAAATGGGCCCAATCCAGCCCGTCGGGCTCTCCCTGGGGACGTGGTAAATAACGGCGTGTTGGTGGAATTCGCGGGCTCCAGTAGATGGTGGGTGGGCCTGTTCGCGGGCCATGCTGGTGGGTCTTTTCAGATATGGGATGCCCACACTGAACAGCGCGTGTTTGTTGGAGGTTCGTTGACTGACCCTGAATCTGTCCTTGGCTGGCACATGTTGACTGAGTTAACTGAAGCCGTGGGCCGAGTCCGGGTCACAGAACAGGAGTTTGTTGTAGCGTGCACAGGTTCAAGGCTGGTTTGTTTTGAATTGAGTAACCCTGAGGTTTTGTTGCGTGATGTAGGGTCGAGTGCTGGGTTTGTGGTGAGTTCTATGGACGTAAGTCATGAGAATTTGGTAGTAGTGGAAAGGAATGGTGTGGGAACAGTACGGCGCGTGAACACATTTGAGCGCGTGAGCAGGTTTAGGATGAGGGGTGCATGGTTGAGGGGTTTGTTGGGGTGCATGAACCTTGGGTACGTTGTAACTTATTCTGGTGGAGGAGGTTTGTTGAGAGTGTGGGACATACACCACCCAAATGGAAGATTGTGTGTCACACTTGCAATTAGAGGAGGGGAGGGACAGGCAAATAGCTTGGTGGCTAATCAAACACATGTGGCTATCTCCTCTAATGACACTTCCATACACTTATTGAATTTTAGTGTACAACAATAG 1410 0.4936 MSSSSSTSSSSSSSHDHDDDAASNVAPPTTRRRNTDFEGPSSSRQRAMNEVWPEPVVELLATHVAIHAAHYHGPLAAASALAIVFQVCSTWREVSRSELLWQRLTRQIWRVTHRLRDTWHLEYIFWHRTARNFSTGRHSFVVPDFDPSDTRGDHHHLPTLICRCLTLSDTHLACGFVDGTVRLFDLETNLHVSTFWSSHGHLFGPFSLAVSGVVITDSVLTFARLDGDIYVAIINGPNPARRALPGDVVNNGVLVEFAGSSRWWVGLFAGHAGGSFQIWDAHTEQRVFVGGSLTDPESVLGWHMLTELTEAVGRVRVTEQEFVVACTGSRLVCFELSNPEVLLRDVGSSAGFVVSSMDVSHENLVVVERNGVGTVRRVNTFERVSRFRMRGAWLRGLLGCMNLGYVVTYSGGGGLLRVWDIHHPNGRLCVTLAIRGGEGQANSLVANQTHVAISSNDTSIHLLNFSVQQ. 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00118 469 PANTHER WD40 REPEAT PROTEIN 12, 37 7 433 - -
Seca7g00118 469 Gene3D - 131 469 IPR015943 GO:0005515
Seca7g00118 469 MobiDBLite consensus disorder prediction 27 48 - -
Seca7g00118 469 SUPERFAMILY F-box domain 81 135 IPR036047 GO:0005515
Seca7g00118 469 SUPERFAMILY WD40 repeat-like 162 465 IPR036322 GO:0005515
Seca7g00118 469 MobiDBLite consensus disorder prediction 1 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00118 Seca-Chr7 1505495 1509793 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SAP Seca7g00118 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00118 - - gmx:100807240 624.78