Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00107 ATGTCCCAAGCAAGCATGTCCTCAGCTGGTGGGGATGATGATCTTGGTGCTAGCTTAATCCTCACAAGCAAGTACACCAGGATATGGCGTAGAACAAGCTTAAACATAAGTTTCCTCATCTCTTTGAAGAAGTCAACAACTGTCACTGCTGCTCCACCATCACCACTTTCTTCAGTACCTTACACCTCATTGCCTCCTGCTAGAACCTCCTCTGCCAAATCTTCTGTTGCAATTGATATATGTTCTTCTCATGCTGAAGAAGAAGAAGATGTACAAGTAGAACAGCTCAATAGGATTGATGTTGCTCGAATTGTGAAGGAGCAGGACTTGAAATCGCTTCTTGAGATTGGTGGGGTTGACCGCGTTTGTGCTATTCTCCAGAGTCAACGTCAACAACACTCAGAGCCAGAGGAGAACACTATTGATTATGGGAACCTTGGTGTGTTGGGGAACCCTGTACCAGTTTATGGAACAAGCTTCTCCAGATTTTTGTTGAATAGCTGGAAACAGAATCGTTACTCAATTTCTATGCTGTTGATCTCAGCTGCATTCTCCTTTGCCACTGAGTTCAAGCAAGAGGGGCCCAAATATGGTTGGCATGATGGTGTTGCCATTGTTTCTGCTGTTCTTATGCTGATTGTGTTCTCTTCAATGACTAACTTTTGGCGTCAAAGACAAATGATGAAATTGGCAAAGAGAAGAGGCAAGTTGGAATTTGAAGTTCAAAGAGATGGAGAGTGCACAAAGGTTGCCTTATCAGATATTGTGGTGGGTGACATGGTGTGTTTGAGGAAGGGTGATGAGGTTCCAGCAGATGGTTTGCTTGTAAGTGGTGAGTCTGGTGACATCCTTGTGCTAGCTGAGGCAATGAAAAGCAAAATTGATTGTAAGAGGAACCCATTTCTTATGGCTGGTTCAAAGGTGATTGAGGGTAATGGATGGATGCTTGTAGCAGCATCAGTTGCATACAAAGGTTATAATAATCCTGAAAAGAGATGCCTGTTGGAGAGTCAAATTGAAAAGCCAATTTCTTACATTGACAAAGCAGCACTTTTTATCTCTACACTGGTTGCACTTGTGGTATTCATTCGCCTAATGTGTAAAAAGAATGTGGATAGTGGTGGGTTGCCAGAAATGAAGGGGAATGTCTCAGTTGGCTTAGTAATGGAAGTCCTTGAGAGAATCTTTTTGAGACCACAAGGAAGGATTTCCATTTTAACAGGTCTTGTAACTGTTGTAATACTATGTGTGCAACATGGGGTGCCACTTATGGTTACAATTTCTCTCAAATACCAGATTGATAAGGTAGTGTCAGACCAAGAGGCAGTTCTTAATGATTTATCAGCTTGTACTACAATGGGGTTGGTAACTGTCATCTGCATTGATGTATCAGGTGGGCTTATATCTAAACCAATGGAGGTTAGCAGAATCTGGATGGGGGAGACAGATATTAGCAAGGTTGAGGGATCAAAATCAGATCCAGGTGTACTTATGCTTAAAGAAGGAGTTGGTTTGTCAGTTCTTGCACCTGAACTTTCACTTTCTCCTATGTCCAATTCACTTGTTTCTTGGGCAGAAACAACATGGGAAATGAACATAAAATCTCTCACACAAGAATATGACATTCTTAAGCACAGAAAACTGAGTTCTGACAAAGAAGGAAGGGGAGTTTTGGTGAGAAAATCTGAGGGCAATGAACCAGTTCTGCACTTGCACTGGAGTGGGACTGCATCCACAATATTGGAAATGTGTTCACAATACTATGATAGTAAAGGGGAATGCCATGCCATGAAAAACCAGAAAATCAAATTTGGGCAGGTGATTAAAGAGATGGAGGACAGTGGCCTTGAACCAATTGCATTTGCTTATAGACAAACACAGGTAGAAGAACTTGAGCAAGATGAATTGATCTTGTTAGGACTAATAGGTCTCAAATACACATGTCAGGAACCAACAAAGTTAGCTTTGGAAAACCTCAGAAATACTGGAATTCAGATCAAGTTGGTCTCAGAGGATGACATCATGTTAGTGAAAGACATAGCTTCTGAACTGGGAATAGATGTGACAGTAGATGGTATTATGCTTGAAGGAAAAGAATTTAAAGATTTGAATGCCAATGTTAGATCAGACAAAGTGGATCCAGCCCTTGTAATGGGAAGTTTCTGTCCTGAAGACAAGCTTCTCATGGTACAATGCTTGCAAGACAAAGGTCATGTGGTTGCATTTGTTGGAAGAAGGTTGAGCCATACTTCAGTTCTAAAGGTAGCTGATGTAGGGATAGTTCATAACTCTCAGAGCAGAATAGTGGATAGAGAGAGTGCTGATATATCTATCAAGTGTTTCAGTGCATTGAAACCAATTGTGAGAGCTGGAAGAAGTAAATATCACAATATTCAGAAGTTCATTCAACTTCAGCTGACATTTACCATATCAGGGTCACTCATAACCTTGATTACAACAATATCCACTGGAGAATCCCCTCTAACAGCAATCCAATTGATTTGGGTGAATGTACTAATGTGCCTTCTGGGTAGCCTAATGATGGTAATGGAGTTAAATAGTAAGGAAGAGCTTGACAAGAAACCATCAGACAGGAATCAGCCAATCACAACCAAGGTAATATGGAAAAACATAGTTATTCAGGTTTTGTGTCAAGCTTTTGTATGCATGATACTTGAATTTTGGGGACATGTTCCTGACAGTGACAAGAAAATCAGGAAAACCATGATCTTCAACACATTCCTATTATGTCAGCTCTTCAAACTGCTCAACACCATGCATTTGTTGAGAAAGGAAGTTTTCAAGATTGTTGTTAAGAGCTGCTGCTGTTTCTTGGTGGCTTTAGGTGGTTGTTTTATTATGCAGGTGTTGGTGATTGAGTATGCAAAAGGCCTAGCAGATTGCATGAGGCTGAATGCTACTCAATGGGCTATCTGTGTCCTGTTTGGTGCACTTCCATGGGTATTTGAATGGGCCTTGAAGATTCTTCCACCTATTCTCAGCACCAATTGTGCTTCAGAATCAAATACTTCAACCACCCCACAAAATTGGTTCTATCATTCTTGA 3066 0.4093 MSQASMSSAGGDDDLGASLILTSKYTRIWRRTSLNISFLISLKKSTTVTAAPPSPLSSVPYTSLPPARTSSAKSSVAIDICSSHAEEEEDVQVEQLNRIDVARIVKEQDLKSLLEIGGVDRVCAILQSQRQQHSEPEENTIDYGNLGVLGNPVPVYGTSFSRFLLNSWKQNRYSISMLLISAAFSFATEFKQEGPKYGWHDGVAIVSAVLMLIVFSSMTNFWRQRQMMKLAKRRGKLEFEVQRDGECTKVALSDIVVGDMVCLRKGDEVPADGLLVSGESGDILVLAEAMKSKIDCKRNPFLMAGSKVIEGNGWMLVAASVAYKGYNNPEKRCLLESQIEKPISYIDKAALFISTLVALVVFIRLMCKKNVDSGGLPEMKGNVSVGLVMEVLERIFLRPQGRISILTGLVTVVILCVQHGVPLMVTISLKYQIDKVVSDQEAVLNDLSACTTMGLVTVICIDVSGGLISKPMEVSRIWMGETDISKVEGSKSDPGVLMLKEGVGLSVLAPELSLSPMSNSLVSWAETTWEMNIKSLTQEYDILKHRKLSSDKEGRGVLVRKSEGNEPVLHLHWSGTASTILEMCSQYYDSKGECHAMKNQKIKFGQVIKEMEDSGLEPIAFAYRQTQVEELEQDELILLGLIGLKYTCQEPTKLALENLRNTGIQIKLVSEDDIMLVKDIASELGIDVTVDGIMLEGKEFKDLNANVRSDKVDPALVMGSFCPEDKLLMVQCLQDKGHVVAFVGRRLSHTSVLKVADVGIVHNSQSRIVDRESADISIKCFSALKPIVRAGRSKYHNIQKFIQLQLTFTISGSLITLITTISTGESPLTAIQLIWVNVLMCLLGSLMMVMELNSKEELDKKPSDRNQPITTKVIWKNIVIQVLCQAFVCMILEFWGHVPDSDKKIRKTMIFNTFLLCQLFKLLNTMHLLRKEVFKIVVKSCCCFLVALGGCFIMQVLVIEYAKGLADCMRLNATQWAICVLFGALPWVFEWALKILPPILSTNCASESNTSTTPQNWFYHS. 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00107 1021 Pfam E1-E2 ATPase 240 319 - -
Seca7g00107 1021 SUPERFAMILY Calcium ATPase, transduction domain A 240 319 IPR008250 -
Seca7g00107 1021 Gene3D - 473 640 IPR023299 GO:0000166
Seca7g00107 1021 SUPERFAMILY Calcium ATPase, transmembrane domain M 172 997 IPR023298 -
Seca7g00107 1021 Gene3D - 783 1000 - -
Seca7g00107 1021 Pfam Cation transporting ATPase, C-terminus 826 995 IPR006068 -
Seca7g00107 1021 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 515 644 IPR023299 GO:0000166
Seca7g00107 1021 Gene3D - 320 472 - -
Seca7g00107 1021 Gene3D - 215 319 - -
Seca7g00107 1021 PANTHER CATION TRANSPORTING ATPASE 93 997 - -
Seca7g00107 1021 Gene3D - 641 782 IPR023214 -
Seca7g00107 1021 SUPERFAMILY HAD-like 458 845 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00107 Seca-Chr7 1415571 1419885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00107 66 1001 Primary Pumps ATPases AT3G63380 33.638 1.05e-154 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00107 K01537 - gmx:102661547 1101.27