LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca7g00102	ATGCTCCCTCCGCGACAGCAGTCACGGGCTGGAGGTCTACAAACATCTCTGTCTCTAGTTTCTTCTGATCCTCGACTTTCCCCAGAGGAACCTAGATCAAACTCTGACAATCTTCGTGAATCTCCTACTGAAAGTGCCAGTTCTCGAGAAACCTGGCCTACTGCTGATGCAATTGCTGCAAAGAAGATGGAGAATGGAAAAGCTGAGATTGATTGCCCTGATCAGTCAGTTATTCGTCGTGTTTCTAGTGCAGATAAAATTAGTCTTCAGGACATTGCAAGAGAAAGAGTTGATATAATATGTGAAAAAATGCATCATCTACCTGAAGAATATCTTGATGAGCTGAAAAATGGACTTCGAGTCATTCTTGAGGGAGGGAATGGCTCACAGCACAGAGAGGAATTTTTCATTTTGCAGAAGCTTGTTCAGAGTAGAACTGACTTAACAGCCAAGGCATTGATAAGAGCACATCGTGTGCAGCTTGAAATCCTTGTTGCCATAAATACTGGAATTCAGGGTTTTTTACATCCTAGCATCAGTCTATCACAGACTTCACTGATTGAGATATTTGTGTATAAAAGATGCAGAAACATAGCTTGCCAAAACCAGCTTCCAGCTGATGATTGTACCTGTGAGACATGCACCAACAACAATGGCTTCTGCAATCTTTGCATGTGTGTTATCTGCAGCAAGTTTGACTTTGAAGTAAATACATGCCGTTGGATTGGATGTGATTTGTGTTCTCATTGGACTCACACAGATTGTGCCATTCGCGAGCAGCTTATTTGCACGGGCCCTTCTGTAAAGAGTGGATCAGGGCCAGGTGAAATGGTTTTCAGGTGTCAAGCATGCAATAGGACTTCAGAACTGTTGGGTTGGGTTAAAGATGTCTTCCAGCATTGTGCACCATCATGGGATGGGGAGGCCTTAATGAGGGAACTTGATTTTGTTAGTAGGATCTTCCATGGTAGTAAAGACCCAAGAGGGAGAAAACTCTTTTGGAAGTGTGATGATCTCAAGGAAAAACTGAAAAGTGGAAAAGTGGAATCCAAGGCAGCATGCAGAGCAATATTGATGGTTTTCCAAGAGCTGGAGGTGGACTCTCCAAAAAGCCTTGAAAATGCCGAAAATGGAAGGCTTATTGCTCCACAGGAGGCATGCAATAGAATTGCTGATGTGGTGCAGGAGGCTATAAGAAAGATGGAAATAGTAGCCGAGGAGAAGATGAGAATGTTCAAGAAGGCTCGCTTGGCTCTTGAAGCTTGTGATCGTGAATTAGCAGACAAGGCCAGAGAAGCAGGAGAACTCAAGATGGACAGGCAAAAAAAGAAGTTACAGATTGAAGAACTGGAGAGAATTGTGAGGCTTAAAACTGCAGAGGCTGATATGTTCCAATTGAAGGCTAACGAGGCTAAACGAGAGGCTGAGAGGCTCCAGAGGATTGCTCTTGCCAAGTCTGATAAATCAGAGGAAGAATATACTAGCAACTATTTGAAACAAAGATTAAGTGAGGCCGAGGCTGAGAAGCAATATCTGTATGAGAAGATCAAATTGCAGGAGACTTCTCGCATATCACAGAGCAGTAGTGGTGGTGACCCCTCCTCAATGCTGATGTATTCCAAAATCCATGATCTTCTCTATAGTGTTCCTCCCAAGGCAGACAGTCAATCTAATGAGTGCCACCCTTTTCGAACAAACCCATGA	1704	0.4354	MLPPRQQSRAGGLQTSLSLVSSDPRLSPEEPRSNSDNLRESPTESASSRETWPTADAIAAKKMENGKAEIDCPDQSVIRRVSSADKISLQDIARERVDIICEKMHHLPEEYLDELKNGLRVILEGGNGSQHREEFFILQKLVQSRTDLTAKALIRAHRVQLEILVAINTGIQGFLHPSISLSQTSLIEIFVYKRCRNIACQNQLPADDCTCETCTNNNGFCNLCMCVICSKFDFEVNTCRWIGCDLCSHWTHTDCAIREQLICTGPSVKSGSGPGEMVFRCQACNRTSELLGWVKDVFQHCAPSWDGEALMRELDFVSRIFHGSKDPRGRKLFWKCDDLKEKLKSGKVESKAACRAILMVFQELEVDSPKSLENAENGRLIAPQEACNRIADVVQEAIRKMEIVAEEKMRMFKKARLALEACDRELADKAREAGELKMDRQKKKLQIEELERIVRLKTAEADMFQLKANEAKREAERLQRIALAKSDKSEEEYTSNYLKQRLSEAEAEKQYLYEKIKLQETSRISQSSSGGDPSSMLMYSKIHDLLYSVPPKADSQSNECHPFRTNP.	568

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca7g00102	567	MobiDBLite	consensus disorder prediction	1	53	-	-
	Seca7g00102	567	Pfam	PHD - plant homeodomain finger protein	195	318	IPR032881	-
	Seca7g00102	567	Pfam	Coiled-coil region of Oberon	413	546	IPR032535	-
	Seca7g00102	567	PIRSF	UCP025218	1	553	-	-
	Seca7g00102	567	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	145	160	IPR004082	-
	Seca7g00102	567	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	232	252	IPR004082	-
	Seca7g00102	567	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	160	175	IPR004082	-
	Seca7g00102	567	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	186	207	IPR004082	-
	Seca7g00102	567	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	448	468	IPR004082	-
	Seca7g00102	567	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	487	509	IPR004082	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca7g00102	Seca-Chr7	1393915	1397227	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca7g00102	195	297	PHD Gene Family	AT5G57380	31.731	1.03e-08	56.2

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca7g00102	-		-	gmx:100795450	1074.31

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