Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca7g00102 | ATGCTCCCTCCGCGACAGCAGTCACGGGCTGGAGGTCTACAAACATCTCTGTCTCTAGTTTCTTCTGATCCTCGACTTTCCCCAGAGGAACCTAGATCAAACTCTGACAATCTTCGTGAATCTCCTACTGAAAGTGCCAGTTCTCGAGAAACCTGGCCTACTGCTGATGCAATTGCTGCAAAGAAGATGGAGAATGGAAAAGCTGAGATTGATTGCCCTGATCAGTCAGTTATTCGTCGTGTTTCTAGTGCAGATAAAATTAGTCTTCAGGACATTGCAAGAGAAAGAGTTGATATAATATGTGAAAAAATGCATCATCTACCTGAAGAATATCTTGATGAGCTGAAAAATGGACTTCGAGTCATTCTTGAGGGAGGGAATGGCTCACAGCACAGAGAGGAATTTTTCATTTTGCAGAAGCTTGTTCAGAGTAGAACTGACTTAACAGCCAAGGCATTGATAAGAGCACATCGTGTGCAGCTTGAAATCCTTGTTGCCATAAATACTGGAATTCAGGGTTTTTTACATCCTAGCATCAGTCTATCACAGACTTCACTGATTGAGATATTTGTGTATAAAAGATGCAGAAACATAGCTTGCCAAAACCAGCTTCCAGCTGATGATTGTACCTGTGAGACATGCACCAACAACAATGGCTTCTGCAATCTTTGCATGTGTGTTATCTGCAGCAAGTTTGACTTTGAAGTAAATACATGCCGTTGGATTGGATGTGATTTGTGTTCTCATTGGACTCACACAGATTGTGCCATTCGCGAGCAGCTTATTTGCACGGGCCCTTCTGTAAAGAGTGGATCAGGGCCAGGTGAAATGGTTTTCAGGTGTCAAGCATGCAATAGGACTTCAGAACTGTTGGGTTGGGTTAAAGATGTCTTCCAGCATTGTGCACCATCATGGGATGGGGAGGCCTTAATGAGGGAACTTGATTTTGTTAGTAGGATCTTCCATGGTAGTAAAGACCCAAGAGGGAGAAAACTCTTTTGGAAGTGTGATGATCTCAAGGAAAAACTGAAAAGTGGAAAAGTGGAATCCAAGGCAGCATGCAGAGCAATATTGATGGTTTTCCAAGAGCTGGAGGTGGACTCTCCAAAAAGCCTTGAAAATGCCGAAAATGGAAGGCTTATTGCTCCACAGGAGGCATGCAATAGAATTGCTGATGTGGTGCAGGAGGCTATAAGAAAGATGGAAATAGTAGCCGAGGAGAAGATGAGAATGTTCAAGAAGGCTCGCTTGGCTCTTGAAGCTTGTGATCGTGAATTAGCAGACAAGGCCAGAGAAGCAGGAGAACTCAAGATGGACAGGCAAAAAAAGAAGTTACAGATTGAAGAACTGGAGAGAATTGTGAGGCTTAAAACTGCAGAGGCTGATATGTTCCAATTGAAGGCTAACGAGGCTAAACGAGAGGCTGAGAGGCTCCAGAGGATTGCTCTTGCCAAGTCTGATAAATCAGAGGAAGAATATACTAGCAACTATTTGAAACAAAGATTAAGTGAGGCCGAGGCTGAGAAGCAATATCTGTATGAGAAGATCAAATTGCAGGAGACTTCTCGCATATCACAGAGCAGTAGTGGTGGTGACCCCTCCTCAATGCTGATGTATTCCAAAATCCATGATCTTCTCTATAGTGTTCCTCCCAAGGCAGACAGTCAATCTAATGAGTGCCACCCTTTTCGAACAAACCCATGA | 1704 | 0.4354 | MLPPRQQSRAGGLQTSLSLVSSDPRLSPEEPRSNSDNLRESPTESASSRETWPTADAIAAKKMENGKAEIDCPDQSVIRRVSSADKISLQDIARERVDIICEKMHHLPEEYLDELKNGLRVILEGGNGSQHREEFFILQKLVQSRTDLTAKALIRAHRVQLEILVAINTGIQGFLHPSISLSQTSLIEIFVYKRCRNIACQNQLPADDCTCETCTNNNGFCNLCMCVICSKFDFEVNTCRWIGCDLCSHWTHTDCAIREQLICTGPSVKSGSGPGEMVFRCQACNRTSELLGWVKDVFQHCAPSWDGEALMRELDFVSRIFHGSKDPRGRKLFWKCDDLKEKLKSGKVESKAACRAILMVFQELEVDSPKSLENAENGRLIAPQEACNRIADVVQEAIRKMEIVAEEKMRMFKKARLALEACDRELADKAREAGELKMDRQKKKLQIEELERIVRLKTAEADMFQLKANEAKREAERLQRIALAKSDKSEEEYTSNYLKQRLSEAEAEKQYLYEKIKLQETSRISQSSSGGDPSSMLMYSKIHDLLYSVPPKADSQSNECHPFRTNP. | 568 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca7g00102 | 567 | MobiDBLite | consensus disorder prediction | 1 | 53 | - | - | |
Seca7g00102 | 567 | Pfam | PHD - plant homeodomain finger protein | 195 | 318 | IPR032881 | - | |
Seca7g00102 | 567 | Pfam | Coiled-coil region of Oberon | 413 | 546 | IPR032535 | - | |
Seca7g00102 | 567 | PIRSF | UCP025218 | 1 | 553 | - | - | |
Seca7g00102 | 567 | PRINTS | Arabidopsis thaliana 130.7kDa hypothetical protein signature | 145 | 160 | IPR004082 | - | |
Seca7g00102 | 567 | PRINTS | Arabidopsis thaliana 130.7kDa hypothetical protein signature | 232 | 252 | IPR004082 | - | |
Seca7g00102 | 567 | PRINTS | Arabidopsis thaliana 130.7kDa hypothetical protein signature | 160 | 175 | IPR004082 | - | |
Seca7g00102 | 567 | PRINTS | Arabidopsis thaliana 130.7kDa hypothetical protein signature | 186 | 207 | IPR004082 | - | |
Seca7g00102 | 567 | PRINTS | Arabidopsis thaliana 130.7kDa hypothetical protein signature | 448 | 468 | IPR004082 | - | |
Seca7g00102 | 567 | PRINTS | Arabidopsis thaliana 130.7kDa hypothetical protein signature | 487 | 509 | IPR004082 | - | |
Seca7g00102 | 567 | PRINTS | Arabidopsis thaliana 130.7kDa hypothetical protein signature | 103 | 125 | IPR004082 | - | |
Seca7g00102 | 567 | PRINTS | Arabidopsis thaliana 130.7kDa hypothetical protein signature | 305 | 324 | IPR004082 | - | |
Seca7g00102 | 567 | Coils | Coil | 433 | 488 | - | - | |
Seca7g00102 | 567 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Seca7g00102 | 567 | PANTHER | VERNALIZATION-INSENSITIVE PROTEIN 3 | 22 | 548 | IPR004082 | - | |
Seca7g00102 | 567 | MobiDBLite | consensus disorder prediction | 38 | 52 | - | - | |
Seca7g00102 | 567 | SMART | PHD_3 | 225 | 285 | IPR001965 | - | |
Seca7g00102 | 567 | CDD | PHD_OBE1_like | 225 | 284 | IPR047578 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca7g00102 | Seca-Chr7 | 1393915 | 1397227 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca7g00102 | 195 | 297 | PHD Gene Family | AT5G57380 | 31.731 | 1.03e-08 | 56.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca7g00102 | - | - | gmx:100795450 | 1074.31 |