Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00094 ATGCAATCAGATAATGGCAAGTTATTTATTGGTGGAATATCATGGGACACAACTGAAGAGCGACTCAGAGAGTATTTCAGTACTTATGGGGAGGTTGTGGAAGCAGTGATAATGAAGGATCGGACAACAGGAAGAGCTCGTGGATTTGGTTTTGTTGTTTTTTCAGACCCAGCTGTTGCAGAAATAGTCATCAAAGAAAAGCACAGCATTGACGGAAGGATGGTTGAGGCAAAGAAAGCTGTTCCGAGGGATGATCAGAATATACTGAGTAGAAACAGTGGCAGCAGCATCCATGGTTCTCCTGGTCCAGGTCGCACAAGAAAGATATTTGTTGGAGGTTTAGCATCAACAGTGACAGAGAGTGATTTCAAGAAGTACTTTGATCAGTTTGGGACTATAACAGATGTTGTAGTAATGTATGATCACAACACTCAGAGGCCTAGAGGCTTTGGATTTATCACTTATGATTCTGAAGAGGCTGTTGACAAGGTCTTGCTCAAGACGTTTCATGAATTGAATGGTAAAATGGTTGAGGTCAAGCGAGCAGTTCCTAAGGAGTTATCACCAGGACCTAGCCGTACCCCACTTGGTGGATTCAACTATGGTCTGAGTAGGGTCAATAGTTTCTTAAATGGCTTCACTCAGGGGTATACTCCAAATGCTGTTGGAGGCTATGGACTTCGGGTGGATGGTAGATTCAGTCCAGTTGCCGGTGGTCGAAGTGGATTTGCTCCATTTGGATCTGGTTATGGAATGAGTATGAATTTTGAACCTGGTTTGAGTGCTGGATTTGGGGGGAATGCAAATTTCAATAACAATCTTAGCTATGGTCGGGGATTAAATCCTTACTTTATTGGCAACTCCAATAGGTTTGGCAGTCCTGTTGGATATGACAATGGCAATGGAGGAAACAATTCTTTCTTCAGTAATGTGACTCGAAATTTGTGGGGGAATGGTGGCCTTAGTTATGGAACAAGTTCTGCAAATTCCAGTGCATACATTGGATCAGGAAGTGGGAGTGTTGGTGGAAACACATTTGGCAATACCGGAGTCAACTGGGGTTCTTCAGCAATTTCTGGACATGGGGGAGGGAACAATGTGTCACAGAATAGTGGCAACCTTGGATATGGAGGTGGCGACAACAGTTATGGTTTGGGGACTGGAGGGTATGGAAGAAGCAGTGGTACCACTCTTGCACCAACATCTTCATACTCTGCATCAAATGGTGGTGTTGATGGGGCTTTTGCTGATTTTTACAATAATAATTCAGTTTATGGGGACCCCACTTGGCGATCTTCAAATTCTGAGCGAGATGGATCAGGTCCCTTTGGTTATGGACTTGGTGGTGCAGCTTCAGATGTTTCTGCCAAGAGTTCTCCTGGTTATGTTGGTGGTTATACTGTTAATAAAAGGCAGCCAAATAGGGGAATTGCTACATAG 1440 0.4382 MQSDNGKLFIGGISWDTTEERLREYFSTYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAEIVIKEKHSIDGRMVEAKKAVPRDDQNILSRNSGSSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRTPLGGFNYGLSRVNSFLNGFTQGYTPNAVGGYGLRVDGRFSPVAGGRSGFAPFGSGYGMSMNFEPGLSAGFGGNANFNNNLSYGRGLNPYFIGNSNRFGSPVGYDNGNGGNNSFFSNVTRNLWGNGGLSYGTSSANSSAYIGSGSGSVGGNTFGNTGVNWGSSAISGHGGGNNVSQNSGNLGYGGGDNSYGLGTGGYGRSSGTTLAPTSSYSASNGGVDGAFADFYNNNSVYGDPTWRSSNSERDGSGPFGYGLGGAASDVSAKSSPGYVGGYTVNKRQPNRGIAT. 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00094 479 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Seca7g00094 479 Gene3D - 104 190 IPR012677 -
Seca7g00094 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 68 IPR000504 GO:0003723
Seca7g00094 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 166 IPR000504 GO:0003723
Seca7g00094 479 SUPERFAMILY RNA-binding domain, RBD 3 105 IPR035979 GO:0003676
Seca7g00094 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Seca7g00094 479 CDD RRM2_Hrp1p 108 185 - -
Seca7g00094 479 Gene3D - 4 88 IPR012677 -
Seca7g00094 479 SUPERFAMILY RNA-binding domain, RBD 106 194 IPR035979 GO:0003676
Seca7g00094 479 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 475 - -
Seca7g00094 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 184 IPR000504 GO:0003723
Seca7g00094 479 MobiDBLite consensus disorder prediction 457 479 - -
Seca7g00094 479 FunFam Heterogeneous nuclear ribonucleoprotein 1 104 191 - -
Seca7g00094 479 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Seca7g00094 479 SMART rrm1_1 108 180 IPR000504 GO:0003723
Seca7g00094 479 SMART rrm1_1 7 78 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00094 Seca-Chr7 1317434 1321693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00094 8 269 Eukaryotic Initiation Factors Gene Family AT1G71770 28.105 2.76e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00094 K14411 - gmx:100795907 806.208