LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca7g00069	ATGGAGGGTGAGAATCAGGTAAATGATGCAAAAAACAAGCAAGTATCTGATGAAGAAGCTTTCCTATATGCCATGGAATTAGCAGGGGCCTCTGCTGTCCCTATGGTTCTCAAGTCAGCTTTGGAGCTTGGAGTCATTGAAACTATAGCAAAGGCTGGCCCTGGAGCTTACCTTTCCCCTTCTCACATAGCTTCTCAGCTTCCATCAATAAAGAATCCAGAAGCACCTGCTATGTTGGATCGCTTGTTGCGCTTATTGGCTAGCTACAACATCCTCACATATTCCCTCATCACTCATACTCATGGAGATAGAGATGCTGAAAGACACTATGGTCTTAGCCCTTATGCCAAATACTTTGTCAACAACCAAGATGGTTTCTCCATGATTTCTTCCTTTCTCATGCAACATGACAAAGTCCTCAAAGACATGTGGTATCATTTGACAGATTCAGTTGAGGAGGGTGGTCTTCCATTTAACAATGCTTATGGGATGACTGCCTTTGAATTTCATGGGACAAATCCAAGGTTCAACAAGCTTTTCAACAAGGGGATGTCAGATTGCTCAAGCATCATAATGAATAAAGTTCTTGAGACCTATAAAGGCTTTGAGGGTCTTGGATCTGTGGTTGATGTTGGTGGTGGGACTGGAACTATCATTAACATGATTGTCTCTAAGTATCCCACCATAAAGGGCATTAATTTTGACTTGCCTCATGTCATTAAAGAAGCTCCATCTTATCCAGGTGTGGAGCATGTTGGTGGAGACATGTTTGTCAGTATTCCAAAAGGTGATGCCATTTTCATGAAGTGGATATGTCATGACTGGAATGATGAGGAATGCTTGAAATTTTTGAAGAATTGCTATGATTCCCTGCCTGAGACAGGGAAGGTGATTTTGGTTGAATGCATTATTCCAGTAGTCCCAGACTCTAAGCTGGCCTCAAGGTGTGTGTTTGAAATGGATGTTATTATGTTGTGTCATAGCTCAGGTGGAAGAGAGAGAACAGAGAAAGAGTATGAGGCATTGGCTAAGGGGGCTGGATTCCAAGGTTTCCAAGTAGCAGGCTGTGCTTTCAACATGTATGTCATGGAGTTTCTTAAGAAGCCTTAG	1110	0.4243	MEGENQVNDAKNKQVSDEEAFLYAMELAGASAVPMVLKSALELGVIETIAKAGPGAYLSPSHIASQLPSIKNPEAPAMLDRLLRLLASYNILTYSLITHTHGDRDAERHYGLSPYAKYFVNNQDGFSMISSFLMQHDKVLKDMWYHLTDSVEEGGLPFNNAYGMTAFEFHGTNPRFNKLFNKGMSDCSSIIMNKVLETYKGFEGLGSVVDVGGGTGTIINMIVSKYPTIKGINFDLPHVIKEAPSYPGVEHVGGDMFVSIPKGDAIFMKWICHDWNDEECLKFLKNCYDSLPETGKVILVECIIPVVPDSKLASRCVFEMDVIMLCHSSGGRERTEKEYEALAKGAGFQGFQVAGCAFNMYVMEFLKKP.	370

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca7g00069	369	PANTHER	O-METHYLTRANSFERASE	24	351	IPR016461	GO:0008168
	Seca7g00069	369	ProSiteProfiles	SAM-dependent O-methyltransferase class II-type profile.	25	367	IPR016461	GO:0008168
	Seca7g00069	369	Gene3D	Vaccinia Virus protein VP39	120	367	IPR029063	-
	Seca7g00069	369	FunFam	Caffeic acid O-methyltransferase	120	367	-	-
	Seca7g00069	369	Pfam	O-methyltransferase domain	144	349	IPR001077	GO:0008171
	Seca7g00069	369	FunFam	Caffeic acid 3-O-methyltransferase	2	119	-	-
	Seca7g00069	369	CDD	AdoMet_MTases	208	300	-	-
	Seca7g00069	369	PIRSF	O-mtase	1	367	IPR016461	GO:0008168
	Seca7g00069	369	Gene3D	-	3	119	IPR036388	-
	Seca7g00069	369	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	124	364	IPR029063	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca7g00069	Seca-Chr7	1096869	1099175	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca7g00069	14	368	Monolignol Biosynthesis Gene Families	AT5G54160	63.944	2.40e-169	475

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca7g00069	K13066		-	gmx:100780100	528.094

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