Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00057 ATGTCGAGCAATCCGCGAATCAATTCACAGCTCGCCATTGCCATTCGATTTGCCAAAATGGCGAGATCTGGGAACTCAAGTGTTACCACAAACAAGGTTTACCACTTTACTCACAATCAGGATCGTCCAGATAAGGCTTTCACTACTGAGAGAGCTAAGAAGGCAGGGAAGGCCAATGCTTGCAGTGGCAAGATATTTGTAACTGTTCCTCCTGATCATTTTGGACCTATCCCTGCTGAGAATGACCCTACAAGGGACCGTGGTGTCCTTGTTGGGGACACTTGGGAGGATCGGATGGAATGTAGACAGTGGGGTGCTCATCTTCCTCATGTTGCTGGCATTGCTGGCCAGAGTTCTTATGGTGCTCAGTCTGTGGCCCTTTCTGGTGGTTACATTGATGATGAGGATCATGGTGAATGGTTCCTTTATACTGGTAGTGGTGGGAGAGATCTCAGTGGTAACAAAAGGACCAACAAGCAGCAATCCTTTGATCAGAAATTTGAGAATATGAATGAGGCACTGAGATTTAGTTGCCGAAAAGGTTATCCAGTTAGGGTTGTCAGGTCCCATAAGGAGAAACGATCTTCTTATGCACCGGATGCTGGGGTGCGATATGATGGGGTTTATAGAATTGAGAAATGCTGGCGGAAAAATGGAGTACATGGTTGCAAGGTTTGCAGATATTTGTTTGTGAGATGTGACAATGAGCCAGCCCCATGGACTACTGCTGACCGTGGAGATCGACCCCGGCCACTTCCTAAAATTAAAGAGTTGAAGGATGCAATTGACATAACTGAAAGGAAGGAATCTCCATCATGGGATTATGATGAGGAAAAGGGCTGCTGGTTGTGGAAGAAGCCTCCGCCACAAAGCAGAAAAACGGTTAATGTGGTAAATCCTGAGGATGGGACTCATGTAAGGGTCAAGCGGAAATTTAAAGATGTGTCTGTCAAAGAAAGGCTTTTAAGAGAGTTTGGCTGCCAAATCTGTCACAAGGTGATGTCTTTTCCTCTTACTACACCCTGTGCTCACAACTTCTGCAAAGCCTGTCTGGAGGGAGCCTTTTCTGGCCAAAGTTTCATCAGAAAGAGGGCATGTGAAAGTGGACGTACTTTAAGGGCACAGAAGAACATTATGAAATGCCCATCATGTTCAATTGACATAGCTGAGTTTCTTCAGAATCCACAGGTTAACAGAGAAATGATGGGTATTATAGAATCACTCCAGCACCAGGTTGAACAGATGGAGGAAAATTCTGAAGAGTTGAGTGATAAAAATGATGAAAATATCAAGAATCTGCATGATGAGGAGGCTGAAGTTTCAAAACCCTGTGATTCAAGTGAAAAAGTTTTGGAGGAAATCAATGACAACGATCTGAATCAGCCACTCAAGCGGAGGAAAAGTTCTGGTGGCACGGTTGTGGTGAACATAGAGGAACATACTGATGAGGCTGAACTAGGAGACGCAGTAAAGGTTTGTAATTAA 1485 0.4458 MSSNPRINSQLAIAIRFAKMARSGNSSVTTNKVYHFTHNQDRPDKAFTTERAKKAGKANACSGKIFVTVPPDHFGPIPAENDPTRDRGVLVGDTWEDRMECRQWGAHLPHVAGIAGQSSYGAQSVALSGGYIDDEDHGEWFLYTGSGGRDLSGNKRTNKQQSFDQKFENMNEALRFSCRKGYPVRVVRSHKEKRSSYAPDAGVRYDGVYRIEKCWRKNGVHGCKVCRYLFVRCDNEPAPWTTADRGDRPRPLPKIKELKDAIDITERKESPSWDYDEEKGCWLWKKPPPQSRKTVNVVNPEDGTHVRVKRKFKDVSVKERLLREFGCQICHKVMSFPLTTPCAHNFCKACLEGAFSGQSFIRKRACESGRTLRAQKNIMKCPSCSIDIAEFLQNPQVNREMMGIIESLQHQVEQMEENSEELSDKNDENIKNLHDEEAEVSKPCDSSEKVLEEINDNDLNQPLKRRKSSGGTVVVNIEEHTDEAELGDAVKVCN. 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00057 494 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 314 438 IPR013083 -
Seca7g00057 494 SMART ring_2 327 384 IPR001841 -
Seca7g00057 494 Pfam RING-type zinc-finger 327 382 IPR027370 -
Seca7g00057 494 SUPERFAMILY RING/U-box 320 409 - -
Seca7g00057 494 ProSitePatterns Zinc finger RING-type signature. 342 351 IPR017907 -
Seca7g00057 494 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 55 250 - -
Seca7g00057 494 SMART G9a_1 70 236 IPR003105 -
Seca7g00057 494 SUPERFAMILY PUA domain-like 58 251 IPR015947 -
Seca7g00057 494 Coils Coil 398 439 - -
Seca7g00057 494 Gene3D - 55 251 IPR036987 -
Seca7g00057 494 ProSiteProfiles Zinc finger RING-type profile. 327 385 IPR001841 -
Seca7g00057 494 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 1 421 IPR045134 -
Seca7g00057 494 ProSiteProfiles YDG domain profile. 84 232 IPR003105 -
Seca7g00057 494 Pfam SAD/SRA domain 87 235 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00057 Seca-Chr7 994454 998363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00057 1 416 C2H2 Transcription Factor Family AT5G39550 66.427 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00057 K10638 - gmx:100786796 801.586