Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00046 ATGGAGATGCAACAGCTTCTCAGCATGGGCTTCCCAGACGAGTTAGCCGCCCAAGCCTTGGCTGCCACCGGCGGCAAATCCACCGTCAAAGCCACCGAATGGATTCTCACTCACAAATCCAACCCTTCCCCATCCTCCTCCTCCTTCCAGCCCAAGCTCGACCGTTTCTTCCATTCCCAATCCATCGAAGAAGACGAACCAACCAAACGCCTCAAGCTATCACCACCAACTTCTAGGTCTTCCTTCTTCTTCAACCGCTCCAAGGCACCAGACAAAAAACACACTCACACTCAAGAACCCTTATACGAGCGTTTGCGTCCTAGAACGTTGGATGACGTGGTGGGTCAGGACCATCTCCTCGCAACCAATTCCCTTCTTCGCTCTGCAATCCAACGCAACCGTCTCCCTTCCATCGTCTTGTGGGGTCCACCTGGCACTGGTAAGACCACTATCGCCAAAGCTATTGTCAATTCAGCAACCTCTTCTTCTTGCTATCGCTTTGTGTCCTTATCTGCTGTCACTAGTGGCGTTAAAGATGTGAGGGATGCTGTTGATGAGGCCAGAAAACTCAGACTCAAAAACAACCAAACCACTGTTTTGTTCGTCGATGAGGTTCACAGGTTCAATAAGTCTCAACAAGACTCTTTCTTACCCGTCATTGAAGATGGAAGCATTGTCTTCGTTGGGGCCACTACTGAAAACCCTTCTTTCCATTTGATTACGCCTCTCTTGTCTCGTTGCCGTGTCCTTACCCTCAACCCTCTTAAACCCCACCATCTTGCTCTGCTTCTCAACCGAGCTGTTACTGATATGGACAGAGGGTTGCTGCAAAGCCTCGGTTTTCAACCTGAAATCAATGTGGCTGAGGATGTGCTTCATTTTATAGCCAACAATTGTGATGGGGATGCTAGGGTGGCTTTGAATGCTTTGGAGATTGCTGCTGTTACTGCAGCTGCACGGTCACAACATGTTAAGAAGGAAAAGGAACAAGACACAAATGAGGAGGAATGCAAGGCTGTTGTTGTTAGTGTTACTCTTGATGATGCAAAGGAGGCATTTCAGTGCAAGCATCTTGCTTATGATAAAGCTGGGGAAGAGCACTATAATTTAATCAGTGCTTTGCATAAGTCTATGAGGGGAAGTGATGCTAATGCTGCGATTTATTGGTTGGCTAGAATGTTACAAGGAGGTGAAGAGCCTCTTTACATTGCACGTAGGCTCATACGGTTTGCAAGTGAGGATGTTGGTTTGGCTGATCCATTAGCTCTTAATCAGGCTGTGTCCTGCTACCAAGCTTGCCACTTTTTGGGAATGCCTGAGTGCAATGTGATTCTTGCACAGTGTGCTGCTTACTTGGCTTTAGCTCCTAAATCTATTGCAGTTTATCGAGCAATTGGAGCTGCTGAAAAGGTTGTAAGGGAATCAGTTGGACAGAATGAAGGGGTGCCTCTTCATCTCAGGAATGCACCAACCAAATTAATGAAGGAAATTGGGTATGGGAAGGGGTACATATACCCTCCTGATAATCCTTCCTCAACACAGACCTACTTACCACCCTCACTTGAAGGTTACAAGTTCCTCAATTGGCCTGACAAGAGTGCCTCTGATGGATAA 1614 0.4721 MEMQQLLSMGFPDELAAQALAATGGKSTVKATEWILTHKSNPSPSSSSFQPKLDRFFHSQSIEEDEPTKRLKLSPPTSRSSFFFNRSKAPDKKHTHTQEPLYERLRPRTLDDVVGQDHLLATNSLLRSAIQRNRLPSIVLWGPPGTGKTTIAKAIVNSATSSSCYRFVSLSAVTSGVKDVRDAVDEARKLRLKNNQTTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFVGATTENPSFHLITPLLSRCRVLTLNPLKPHHLALLLNRAVTDMDRGLLQSLGFQPEINVAEDVLHFIANNCDGDARVALNALEIAAVTAAARSQHVKKEKEQDTNEEECKAVVVSVTLDDAKEAFQCKHLAYDKAGEEHYNLISALHKSMRGSDANAAIYWLARMLQGGEEPLYIARRLIRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCAAYLALAPKSIAVYRAIGAAEKVVRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYPPDNPSSTQTYLPPSLEGYKFLNWPDKSASDG. 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00046 537 Gene3D - 354 457 - -
Seca7g00046 537 FunFam Putative AAA family ATPase 354 457 - -
Seca7g00046 537 Gene3D - 255 331 - -
Seca7g00046 537 MobiDBLite consensus disorder prediction 60 100 - -
Seca7g00046 537 Gene3D - 88 253 IPR027417 -
Seca7g00046 537 SUPERFAMILY post-AAA+ oligomerization domain-like 364 531 IPR008921 GO:0003677|GO:0006260
Seca7g00046 537 CDD AAA 114 248 - -
Seca7g00046 537 FunFam Replication-associated recombination protein A 92 254 - -
Seca7g00046 537 PANTHER WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER 1 534 - -
Seca7g00046 537 MobiDBLite consensus disorder prediction 86 100 - -
Seca7g00046 537 SUPERFAMILY UBA-like 3 47 IPR009060 GO:0005515
Seca7g00046 537 Gene3D - 2 50 - -
Seca7g00046 537 Pfam AAA C-terminal domain 284 379 IPR032423 -
Seca7g00046 537 Pfam MgsA AAA+ ATPase C terminal 380 529 IPR021886 -
Seca7g00046 537 CDD HLD_clamp_RarA 255 354 - -
Seca7g00046 537 Pfam UBA/TS-N domain 4 35 IPR015940 -
Seca7g00046 537 Gene3D - 458 535 - -
Seca7g00046 537 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1 38 IPR015940 -
Seca7g00046 537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 329 IPR027417 -
Seca7g00046 537 SMART AAA_5 134 255 IPR003593 GO:0016887
Seca7g00046 537 PRINTS CbxX/CfqX superfamily signature 187 206 IPR000641 GO:0005524
Seca7g00046 537 PRINTS CbxX/CfqX superfamily signature 302 314 IPR000641 GO:0005524
Seca7g00046 537 PRINTS CbxX/CfqX superfamily signature 137 152 IPR000641 GO:0005524
Seca7g00046 537 FunFam AAA-type ATPase family protein 255 335 - -
Seca7g00046 537 Pfam ATPase family associated with various cellular activities (AAA) 138 249 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00046 Seca-Chr7 928342 929955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00046 100 380 Core DNA Replication Machinery Family AT1G77470 25.436 7.20e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00046 K07478 - gmx:100799257 856.67