Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00040 ATGGAAAAGAGAGGCGCAGTTTCAGATGCTGAGCTTCAAACTGTGTTGGATCCTGCTCAGACAAAGACATGTGGTGATGGAAATGAAAAAGGTTCCTTGATTCCTCAATCCAGAAGACCTACCCTCTCCTCGTTGCAAATACCAGCATGGTCATTGGATATTGCTTTATCTTCTTTTGCAAAGACGGATGGTCCTTCACCTTCAGTTTCACTGTCAAGTCCTGGTTCAACTGCTAGAGGACTTCCCCCAAGGCCAAATTCAGCTAAAGCCAGACCTTCCATGAGAAGTTTACTTCCTCAGAGGAGCTTAAGGACAAAAGCTTCTCCCCGGGATGTTGAAAGGACAGTTCTTATAGTTCCTGATACTCCCTCGTCAGATGCTCCTTTGGAGAAACCTTCCACTTCAAGGTCCCTGTCTCTTAATAGTAGGGTCATAACACCCCCATCAACAAAAGCTGTACACTCATTACCAGTTACTCCATTTGCAACTTCAGGTGCAGAGAATGTGCATGGAAAACGTCTGGGGTGTGATTCTGGTTTTAGTACAATTGAAATTCAGCAGCATATAACTCGATCATTATCGGTTCCAGTTAATGGCAAAGGCACTAAGTTAAGGCGTACAGATTCTAGGTGCTTGATTCGTGTGATTTCAGCACAACCACATCTTGAAACTGTTGTTGCAACCTCAACTGATGATGCTTCGGTTCCAAAGACCGCTGTTGAAGATGCTAGTGAGGATATTCCAGAGGAAGAAGCAGTGTGTAGGATTTGTTTGGTGGAGCTTGGGGAAGGAGGAAATACTCTTAAGATGGAATGCAGTTGTAAAGGTGATCTTGCACTTGCTCATCAAGAGTGTGCTGTAAAGTGGTTTAGTATTAAAGGAAACCGGACCTGTGATGTCTGCAAGCAGGATGTTCAAAACCTCCCAGTAACACTGTTGAAAATTTATAATCCTCAAACTGCTTCTAGGCAGCCATCAAATGTGCCACAACAGAGAGAAGTAGCATATTACAGGATCTGGCAGGATGTACCGGTACTTATCTTGGTCAGCATGCTTGCTTACTTTTGCTTCCTAGAGCAACTACTGGTATGCTTTTCTTTGTACATGTGCAGAAGTTTATGGTAA 1125 0.4364 MEKRGAVSDAELQTVLDPAQTKTCGDGNEKGSLIPQSRRPTLSSLQIPAWSLDIALSSFAKTDGPSPSVSLSSPGSTARGLPPRPNSAKARPSMRSLLPQRSLRTKASPRDVERTVLIVPDTPSSDAPLEKPSTSRSLSLNSRVITPPSTKAVHSLPVTPFATSGAENVHGKRLGCDSGFSTIEIQQHITRSLSVPVNGKGTKLRRTDSRCLIRVISAQPHLETVVATSTDDASVPKTAVEDASEDIPEEEAVCRICLVELGEGGNTLKMECSCKGDLALAHQECAVKWFSIKGNRTCDVCKQDVQNLPVTLLKIYNPQTASRQPSNVPQQREVAYYRIWQDVPVLILVSMLAYFCFLEQLLVCFSLYMCRSLW. 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00040 374 ProSiteProfiles Zinc finger RING-CH-type profile. 246 308 IPR011016 GO:0008270
Seca7g00040 374 MobiDBLite consensus disorder prediction 1 42 - -
Seca7g00040 374 MobiDBLite consensus disorder prediction 61 140 - -
Seca7g00040 374 PANTHER OS02G0165000 PROTEIN 29 363 - -
Seca7g00040 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 309 IPR013083 -
Seca7g00040 374 SMART ringv_2 253 302 IPR011016 GO:0008270
Seca7g00040 374 MobiDBLite consensus disorder prediction 61 80 - -
Seca7g00040 374 SUPERFAMILY RING/U-box 250 305 - -
Seca7g00040 374 CDD RING_CH-C4HC3_MARCH 254 302 - -
Seca7g00040 374 Pfam RING-variant domain 254 301 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00040 Seca-Chr7 885761 889177 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00040 231 308 C3H Transcription Factor Family AT2G37950 41.975 4.48e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00040 - - gmx:100789461 522.702