Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00036 ATGGGTTGTTGCCAATCGTCGTTGCTGCTGGGCGTGAGAGATGGGGAAACTCACCCTGAAAAGGAAAAGGAAAAGGAACAACAACCCTACCGCAACCACAATCTCAATCTCTCTCAATCCCAAACTCAGTCTCAGACCGAACGTGAATCTCTAGTAGTTGATCCTTCATCCTTCTCCTTCTCCGAGTTCTCCTTCGCAGACCTTAAAGCCGCCACCAACAATTTCAGCTCTGACTACATCGTCTCAGAGAGTGGGGAGAAAGCACCGAACCTTGTCTACAAGGGTCGACTTCAGAACCGCCGTTGGATTGCTGTCAAGAAGTTCAGCAAAGCTGCTTGGCCCGATCCCAAGCAATTCGTTGAAGAAGCTTCTGGTGTTGGCAAATTGCGGCATCCAAGGCTTGCTAATTTGATCGGTTACTGCTGCGATGGCGATGAGAGGCTTCTCGTTGCTGAGTACATGCCTAATGACACTCTCGCTAAGCACCTCTTCCACTGGGAAAATCAGACAATTGAATGGGCCATGCGCTTAAGAGTCGCTCTTTATATTGCACAGGCTTTACATTACTGCACTTCTGAGGGTCGCCCCTTGTACCATGATTTGAATGCTTATAGGGTTCTTTTCGATGAGGAGGGTGATCCGCGCCTCTCCTGTTTTGGTTTAATGAAGAACAGCAGGGATGGAAAAAGTTATAGCACAAACCTTGCCTACACACCTCCTGAATATTTAAGAAATGGAAGGGTCACCCCTGAAAGTGTCATTTATAGCTTTGGAACTGTTCTTCTAGACCTGCTGAGTGGCAAGCACATCCCTCCAAGTCATGCACTTGATATGATACAGGGAAAAAACAACATGCTCTTGATGGATTCACATTTGGAGGGAAAGTTTTCTACAGAAGAGGCAACGGTAGTTGTCAATCTTGCCTCTAAATGTTTGCAATATGAACCACGGGAGCGGCCTGATACAAAGGATTTGGTGACAACACTTGCTCCATTGCATACAAAACCTGATGTACGTGTCCCTTCTCTAACTAAAGAATGGAACAAATTATTTACTAAATCCAGAGATTGA 1071 0.4594 MGCCQSSLLLGVRDGETHPEKEKEKEQQPYRNHNLNLSQSQTQSQTERESLVVDPSSFSFSEFSFADLKAATNNFSSDYIVSESGEKAPNLVYKGRLQNRRWIAVKKFSKAAWPDPKQFVEEASGVGKLRHPRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQTIEWAMRLRVALYIAQALHYCTSEGRPLYHDLNAYRVLFDEEGDPRLSCFGLMKNSRDGKSYSTNLAYTPPEYLRNGRVTPESVIYSFGTVLLDLLSGKHIPPSHALDMIQGKNNMLLMDSHLEGKFSTEEATVVVNLASKCLQYEPRERPDTKDLVTTLAPLHTKPDVRVPSLTKEWNKLFTKSRD. 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00036 356 Gene3D Phosphorylase Kinase; domain 1 50 153 - -
Seca7g00036 356 MobiDBLite consensus disorder prediction 31 48 - -
Seca7g00036 356 Gene3D Transferase(Phosphotransferase) domain 1 155 341 - -
Seca7g00036 356 MobiDBLite consensus disorder prediction 13 48 - -
Seca7g00036 356 Pfam Protein tyrosine and serine/threonine kinase 92 329 IPR001245 GO:0004672|GO:0006468
Seca7g00036 356 FunFam probable serine/threonine-protein kinase At4g35230 52 153 - -
Seca7g00036 356 SUPERFAMILY Protein kinase-like (PK-like) 57 334 IPR011009 -
Seca7g00036 356 ProSiteProfiles Protein kinase domain profile. 78 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g00036 356 MobiDBLite consensus disorder prediction 14 30 - -
Seca7g00036 356 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 26 339 IPR045845 GO:0004672|GO:0009742
Seca7g00036 356 FunFam probable serine/threonine-protein kinase At5g41260 155 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00036 Seca-Chr7 859533 862624 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00036 9 341 Glycoside Hydrolase AT3G07070 33.799 9.27e-49 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Seca7g00036 PK_Tyr_Ser-Thr 3.1e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00036 K14500 - gmx:100808907 583.948