Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00025 ATGAAGGATTGTGAAAGAGATGATCCTCCTCCATCTTCTTCTTCTTCTTCCCGAAAGAAGCGCACCAAAATGGTTGAAGAAAGAGGCATTGCACATTCCTGCACAGAGTGCGGTAAGAAGTTCTGGTCTTCCAAGGCTCTGTTTGGCCACATGCGATGTCACCCTGAGCGTCAATGGAGAGGGATCAATCCTCCTCCCAATTTCAGAAGACCACAACACCAACAGATAACAATGACTCAAGAGGATCACGAGGTTGCCGCTTGTTTGCTCTTACTTTCAAATGCAAATGAAAAGGGAAAAGGTACTACTACTAGTTGTTATAATTACGTGGTGGAGTCTCCGAGTCAGAGCAATGTTTCCAGCACTCATTTTGAGTGCTCCAGTTGCAACAAGGTCTTTGGATCACACCAGGCTCTTGGAGGACACAGGGCTAGTCACAAGAATGTCAAGGGTTGTTTTGCCAATGCCATAACAACAACTGCTTTTGTTGCTGACCCTATTCCCTTTCCCATCAATGTCATGATGCTTGCAGGTACCACATCTTCCACTATAGGAGAAGGGGATCCAGATGCAGCAGATGAAAGTGGAGGCCACAAGTGTAGCATATGCCTTAGGGTATTCCCCACTGGTCAAGCCCTTGGTGGTCACAAGAGGTGTCACTGGGAGAAAGGGGATAATGCTGCACCCAAGTCTCTTGTTGACTTGAATTTGCCTCCTCTTGATGGTGATGATCATGATTGTTCCTCTTCCCTTACTCTAGATTTGAGGTTGGGACTCTAA 780 0.4641 MKDCERDDPPPSSSSSSRKKRTKMVEERGIAHSCTECGKKFWSSKALFGHMRCHPERQWRGINPPPNFRRPQHQQITMTQEDHEVAACLLLLSNANEKGKGTTTSCYNYVVESPSQSNVSSTHFECSSCNKVFGSHQALGGHRASHKNVKGCFANAITTTAFVADPIPFPINVMMLAGTTSSTIGEGDPDAADESGGHKCSICLRVFPTGQALGGHKRCHWEKGDNAAPKSLVDLNLPPLDGDDHDCSSSLTLDLRLGL. 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00025 259 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 11 259 - -
Seca7g00025 259 ProSitePatterns Zinc finger C2H2 type domain signature. 200 220 IPR013087 -
Seca7g00025 259 ProSiteProfiles Zinc finger C2H2 type domain profile. 124 151 IPR013087 -
Seca7g00025 259 ProSitePatterns Zinc finger C2H2 type domain signature. 126 146 IPR013087 -
Seca7g00025 259 Gene3D Classic Zinc Finger 12 88 - -
Seca7g00025 259 Gene3D Classic Zinc Finger 121 220 - -
Seca7g00025 259 Pfam C2H2-type zinc finger 123 147 - -
Seca7g00025 259 Pfam C2H2-type zinc finger 31 56 - -
Seca7g00025 259 Pfam C2H2-type zinc finger 198 222 - -
Seca7g00025 259 SUPERFAMILY beta-beta-alpha zinc fingers 32 146 IPR036236 -
Seca7g00025 259 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Seca7g00025 259 ProSiteProfiles Zinc finger C2H2 type domain profile. 198 220 IPR013087 -
Seca7g00025 259 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Seca7g00025 259 SMART c2h2final6 198 220 IPR013087 -
Seca7g00025 259 SMART c2h2final6 32 54 IPR013087 -
Seca7g00025 259 SMART c2h2final6 124 146 IPR013087 -
Seca7g00025 259 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00025 Seca-Chr7 787843 788622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00025 30 259 C2H2 Transcription Factor Family AT4G35280 51.852 3.86e-70 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca7g00025 zf-C2H2_6 2.1e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00025 - - gmx:100792631 249.98