Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00024 ATGGAATATGGTGCGTTGGTGCAGGATTCAGCGTTTGGGAGCTTGTCAGAGTGTGGCTCAGTGACGGTTACAGAAGCAGATATGGTTGATGAGCTGTTGGTAGACGGTTGTTGGGTGGAAGCCAGTGCTGGATCGTACAACATGCAGCAGCAGCAGCAGGCATGTGATCAGTACTCCTCCTCCACCAATCAGTTCCAACAAGACGAAACTAATTTTGTGGTTGGGAAGAGATGGTGGATTGGGCCAAGGGGAACAAATCCAGGTCCATCTTCCTCCGTGAAAGAGAGATTGGTGGTTGCGGTTGGGTACTTGAAAGAATACACAAAGAACGCCAATGTACTCATTCAGATATGGGTGCCGTTACGAAGAGGACTTCACTACCACGCAAATAATGTTGTAACCACCAACAATCCAGATCATGATGATTCTGTTTCGGTTGTTAGTTTTCCCATGAGCCCCAACGCCAGTCCAAACCCAAACGTAACCGTTCGCTTCTTTAGAAGCCACGAGTACCCGCGCGTCGTTCAACCGCACCAATACGGATCTCTAGCCCTTCCTGTCTTTGAAAGAGGCACTGCCACATGCCTTGGTGTCCTCGAGATTGTTATGACTAACCAAACTATCATCCATTACCGCCCCCAACTTGACAATGTCTGCAATGCTCTCGAGGCTGTTGATTTTAGAACTAGTCAGAACTACATTCCACCTGCAGTAAAGGTATTTGACGAACTGTACCAAGCAGCACTGAATGAGATCGTGGAGGTGTTGACGTCGGTGTGCAAGACTCACAATCTGCCTTTAGCACTGACTTGGGCTCCTTGCATCCAACAAGGGAAGTGTGGGTGTGGGGTTTCAAGTGATCAGAATTACGTGTGCTGCGTGTCCACCGTGGATTCCGCGTGTTTTGTGGCGGATCTGGATATATTGGGATTCCAAGAAGCGTGCTCTGAGTATCACCTTTTCCGTGGACAGGGAATAGTTGGCACAGCCTTCACAACAACCAAACCGTGTTTTGCGATGGACATAACCGCTTTTAGCAAAGCGGAATATCCTCTTGCTCACCATGCAAAAATGTTTGGATTGCATGCCGCTGTGGCGATTCCTCTAAGGAGTGTCTACACAGGATCAGCTGATTTTGTTTTGGAGTTTTTCTTACCAAAGGATTGTCATGACAGCGAAGAGCAGAAACAGATGCTGCACTCATTATCCATGGTGGTACAACAAGCTTGCCGAAGCTTGCATGTGGTGATGGAGGATGACTTCACTTTACCTCACAGTAAAGAAGAAATTGCTCCTCATCATCATGATCAGAAACTATTTGCATCTCCCTCACAATCACAAGTAGAAGCATGTTCCAAAGAGTCATCATCATCATGGATTGCACATATGATGGAGGCACAGCAGAAGGGGAAAGGCGTGTCTGTGTCGTTGGAATATCTTGAAGAGCCAAAAGAGGAGTTCAAAGTGACAACAAACTGGGACACCAGTACGGATCAGGATCAGCATGCACAGACACAGGTGTTTTCAGATTTTGGTCAACTTGAGCAAAGTTCAGGGTCAAGATTCAAAGCAAGTGTGGAAGGTGGAGAAGAATCTTATACATTTGGTGGCCGCCGTTCATCTTCTGGTGGCAGAAAACCAGGTGAGAAGAGACGAACCAAGGCAGAGAAGACTATTAGCTTGCCAGTTCTGAGACAATACTTTGCAGGAAGCTTGAAAGATGCAGCTAAGAGCATTGGTGTATGTCCTACAACTCTGAAAAGGATATGTAGACAGCATGGCATTACAAGGTGGCCTTCAAGGAAAATCAAGAAGGTAGGGCACTCTTTAAAGAAACTTCAACTGGTGATTGATTCAGTTCAGGGTGCTGAGGGTGCCATACAGATTGGGTCCTTCTATGCAAGTTTTCCAGAGTTGAGCTCTGCAGATTTCTCTGCCAGTCGGCGTTCTGAGTCATCGAAGAAAATGATGAATGGTTATCCAGAGAACAGCTTGTATGGCCATGGAGATGGAATCACCAGTTTGAAATCCCCACCTTCTGCTTGCAGTCAGAATTTTGGTCCAACAACCAACCAATCTTCCACTATCATCACTAACAATGGGGATGTTCTAATGACAGAAAGCCCTGCTCCTCCTCCTCCCCATACTGATGCAGCATTGCTGAGGAGAGTTCACAGTGAGGCAGAATTATTGCATGCATCAATCCAATTAGAGGATACAAAACATTTCACAACCAGAGCCAAGAGCCAACAAACTCTATTACCTCCCTTGTCTGAAAGTAGTGGGTGGAACTCACTTGAAAGGGGTGCTTTCAGAGTCAAAGCTACTTTTGCGGATGAGAAAATCCGTTTTAGCTTGCAACCGATGTGGGGCTTCAGAGATTTGCAGCATGAGATTGCAAGACGTTTCAATCTAAACGACATTAGCAACATGGTGCTCAAGTATTTGGATGATGATGGAGAGTGGGTGGTTTTAGCATGCGATGCTGATCTTGAGGAGTGTAAAGACTTGCATAGATCATCACAGAGCCGCACAATTAGACTCTCCTTATTTCAAGCTTCGCCTCTTAATAATACGTTCCGCAACAGCAGCAGCCCATCCTAA 2604 0.4624 MEYGALVQDSAFGSLSECGSVTVTEADMVDELLVDGCWVEASAGSYNMQQQQQACDQYSSSTNQFQQDETNFVVGKRWWIGPRGTNPGPSSSVKERLVVAVGYLKEYTKNANVLIQIWVPLRRGLHYHANNVVTTNNPDHDDSVSVVSFPMSPNASPNPNVTVRFFRSHEYPRVVQPHQYGSLALPVFERGTATCLGVLEIVMTNQTIIHYRPQLDNVCNALEAVDFRTSQNYIPPAVKVFDELYQAALNEIVEVLTSVCKTHNLPLALTWAPCIQQGKCGCGVSSDQNYVCCVSTVDSACFVADLDILGFQEACSEYHLFRGQGIVGTAFTTTKPCFAMDITAFSKAEYPLAHHAKMFGLHAAVAIPLRSVYTGSADFVLEFFLPKDCHDSEEQKQMLHSLSMVVQQACRSLHVVMEDDFTLPHSKEEIAPHHHDQKLFASPSQSQVEACSKESSSSWIAHMMEAQQKGKGVSVSLEYLEEPKEEFKVTTNWDTSTDQDQHAQTQVFSDFGQLEQSSGSRFKASVEGGEESYTFGGRRSSSGGRKPGEKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGAIQIGSFYASFPELSSADFSASRRSESSKKMMNGYPENSLYGHGDGITSLKSPPSACSQNFGPTTNQSSTIITNNGDVLMTESPAPPPPHTDAALLRRVHSEAELLHASIQLEDTKHFTTRAKSQQTLLPPLSESSGWNSLERGAFRVKATFADEKIRFSLQPMWGFRDLQHEIARRFNLNDISNMVLKYLDDDGEWVVLACDADLEECKDLHRSSQSRTIRLSLFQASPLNNTFRNSSSPS. 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00024 867 Pfam PB1 domain 771 852 IPR000270 GO:0005515
Seca7g00024 867 ProSiteProfiles RWP-RK domain profile. 545 626 IPR003035 -
Seca7g00024 867 Pfam RWP-RK domain 559 606 IPR003035 -
Seca7g00024 867 Gene3D - 769 855 - -
Seca7g00024 867 CDD PB1_NLP 771 852 IPR034891 -
Seca7g00024 867 SMART PB1_new 770 853 IPR000270 GO:0005515
Seca7g00024 867 MobiDBLite consensus disorder prediction 519 555 - -
Seca7g00024 867 ProSiteProfiles PB1 domain profile. 770 853 IPR000270 GO:0005515
Seca7g00024 867 PANTHER PROTEIN NLP8 53 858 IPR045012 GO:0003700
Seca7g00024 867 SUPERFAMILY CAD & PB1 domains 760 855 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00024 Seca-Chr7 749050 753561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00024 75 854 NLP Transcription Factor Family AT4G35270 48.033 0.0 689
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Seca7g00024 PB1 9.5e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00024 - - cam:101498016 999.964