Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00021 ATGGGAATTTGCTGGGGTTCTCCACCTCACGACCCAACCCCAACGGGAACCGTCAAGTCTGTTTTTCCTTGCTCTTGTTTCTCCTATGTAGCTACACCGGCGACATCCCTGTCCCAGGCCCAGTCCCAGTCCCAGACGACCAACAGCAGCTATACTACTAGTACTACTTCTTCTGGAAGTGGGACCAGTTCCATAAATAGCAAGTTCTCGGTGTCAAGTGGTGACGAAACTTATCCCGGTGGTCAGATTCTAGCTACCTCTAATTTGAGGATCTTCACTTTTGCGGAGTTGAAGGCCGCAACTAGGAATTTCAGAGCTGATACACTACTTGGGGAGGGTGGTTTTGGAAAAGTCTACAAGGGTTGGCTTGAAGAGAGGGCCTCGTCAAAGAGTGGAAGTGGAACAGTCATTGCCGTGAAAAAATTGAACTCCGAAAGCTTACAAGGAATTGAGGAGTGGCAGTCAGAAGTACATTTTCTTGGACGCCTTTCTCATCCTAACCTGGTTAAGCTGTTGGGATACTGCTTGGAGGAAACAGAGCTTCTACTTGTATATGAATTCATGCAGAAGGGCAGTCTGGAAAATCATCTATTTGGAAGAGGCTCTGCTGTTCAACCTCTTCCTTGGGAAATCAGGCTTAAGATTGCAATTGGAGCAGCTCGTGGCCTTGCATTCTTGCATACATCTGAGAAAGTAATTTACAGAGACTTCAAGGCCTCCAATATATTGCTTGATGGGTCGTATAATGCAAAGATATCAGACTTTGGCTTGGCAAAACTGGGTCCTTCTGCTAGTCAATCCCATGTGACAACAAGGGTGATGGGCACATATGGTTATGCAGCTCCTGAATATGTGGCCACAGGGCATCTATATGTAAAGAGCGACGTGTATGGGTTTGGAGTTGTTTTGGTTGAGATCCTAACTGGCCTACGAGCGCTTGATCCCAACCGTCCAAGTGGGCAACATAATCTAACAGATTGGGTCAAACCATACCTACAAGATAGAAGAAAATTGAAGAGCATAATGGATTCTCGATTGGAAGGAAAATATCCATCCAAAGCTGCTTTTCGTATAGCTCAGCTTGCTTTAAATTGTCTTGCAGCTGAGCCCAAACATCGGCCATCAATGAAGGAAGTTTTGGAGAGCTTGGAGCGAATTCAAGCTGCCAATGAGAAACCTGTGGAGCCCAAGTTCCGCTCTACCCACTCCCATGCTTCCCAACAGGCTGTACACCACCGTTCTCCACTTCATCCAAATCCAAGGCATGATCGTTCATGA 1278 0.4648 MGICWGSPPHDPTPTGTVKSVFPCSCFSYVATPATSLSQAQSQSQTTNSSYTTSTTSSGSGTSSINSKFSVSSGDETYPGGQILATSNLRIFTFAELKAATRNFRADTLLGEGGFGKVYKGWLEERASSKSGSGTVIAVKKLNSESLQGIEEWQSEVHFLGRLSHPNLVKLLGYCLEETELLLVYEFMQKGSLENHLFGRGSAVQPLPWEIRLKIAIGAARGLAFLHTSEKVIYRDFKASNILLDGSYNAKISDFGLAKLGPSASQSHVTTRVMGTYGYAAPEYVATGHLYVKSDVYGFGVVLVEILTGLRALDPNRPSGQHNLTDWVKPYLQDRRKLKSIMDSRLEGKYPSKAAFRIAQLALNCLAAEPKHRPSMKEVLESLERIQAANEKPVEPKFRSTHSHASQQAVHHRSPLHPNPRHDRS. 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00021 425 MobiDBLite consensus disorder prediction 38 71 - -
Seca7g00021 425 CDD STKc_IRAK 110 386 - -
Seca7g00021 425 Gene3D Transferase(Phosphotransferase) domain 1 188 410 - -
Seca7g00021 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Seca7g00021 425 PANTHER OS01G0588500 PROTEIN-RELATED 48 387 - -
Seca7g00021 425 FunFam Serine/threonine-protein kinase PBS1 188 402 - -
Seca7g00021 425 ProSitePatterns Protein kinases ATP-binding region signature. 110 141 IPR017441 GO:0005524
Seca7g00021 425 Pfam Protein tyrosine and serine/threonine kinase 107 383 IPR001245 GO:0004672|GO:0006468
Seca7g00021 425 SUPERFAMILY Protein kinase-like (PK-like) 88 412 IPR011009 -
Seca7g00021 425 MobiDBLite consensus disorder prediction 390 425 - -
Seca7g00021 425 ProSiteProfiles Protein kinase domain profile. 104 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g00021 425 Gene3D Phosphorylase Kinase; domain 1 88 187 - -
Seca7g00021 425 FunFam Serine/threonine-protein kinase BIK1 71 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00021 Seca-Chr7 687599 691397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00021 80 391 Receptor kinase-like Gene Family AT4G02010 50.000 1.35e-102 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca7g00021 PK_Tyr_Ser-Thr 2.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00021 - - gmx:100305417 674.855