Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00018 ATGCAGCTAGTAGCCTACCAATACCATAGCCACAGGTTTTGGATGATTCTGCTATGCCTTGCATTAACATTAATCCTATTACATGGAAGGGAAGAAGCTTCCAGTTCCAGACATGATGTCGTCAAAATCGGTGCCATTTTCACATTAAAAACTATAAACGGACGAGTTTCCAAAATTGCCATCGAAGCTGCTCAGAAAGATGTGAATTCCGACCCTCACTTCTTGGGTGGACGTAAATTGTCCATAGCCATCCATGATTCCAACTTCAGTGGTTTCCTTGGCTTTATTGGGGCCCTCAAGTTCTTGGTGACTGATACGGTAGCTATAATTGGTCCTCAAAGTTCAGTAATGGCTCATGTGCTTTCACATCTTGCAAATGGGCTCCATGTTCCTCTACTGTCCTTCACTGCTCTGGATCCCACCCTAACACCTCTTCAGTATCCTTTTTTTGTCCAAACAGCACCCAGTGATCAGTTCCAGATGACTGCAGTTGCTGACATAATTAGTTATTTTGGTTGGAGACAAGTTATTGCAATTTTCAGTGATGATGATCAGAGTCGAAATGGGATAACTGTATTAGGTGATAAACTTGCTGACAGGCGCTGTAAGTTGTCTTATAAAGCAGCACTTCCCCCTGATCCAACCGCCACTCCAGCTGATGTTACTGATCAGTTGGTGAAGATTAAAAGCATGGAAGCTCGAGTAATTGTTTTAAACACCTTCAAGCAAACAGGCATGATGGTTTTTGATGTTGCTCAAAAACTAGGGATGATGAGCAAAGGGTATGTTTGGATAGCTACTTCTTGGCTATCAACTGTTTTGGATTCTACTTCACTAGCACTAAATACTTCTAACTCAATTCAAGGAGTTCTTACACTTCGCCCTTACACCCCTCAGTCAAGTAAAAAACAGGCCTTTATCTCAAGGTGGAACCACTTAAGTAATGGCTCAATTGGGTTAAATCCATATGGACTATATGCTTATGATTCTGTTTGGATGATTGCTCATGCATTAAAATTGTTTTTTGATCAGAATGGAACCATTTCATTCTCTAATAATACAAAATTAAATGGTATGAAGGGAGAGACTCTGGATCTTGGTGCTTTGAATGTTTTTGATGGAGGGAAACAGTTACTTGATAACATATTGCACATTAATATAACAGGGTTGACAGGACCTATTCAATTTGGTTCAGACAGGTCCCCTTTACATCCATCATATGACATCCTTAATGTAATTGGTACTGGTCATAGGAGAATTGGATACTGGTCTAATTATTCAGGGCTCTCTGTAATAATCCCTGAGAAACTTCAAACAAAACCTGCCAATCGTTCAAGTTCCAACCAGCATCTAGATGGTGTGATATGGCCTGGAAATACAACAGAAATGCCTCGTGGATGGGTTTTCCCAAATAATGGAAGGCAACTGAGAATTGGAGTTCCAAACAGAGTTAGTTATAGAGACATGGTCTCACAAATAAATGGCACTGATGCAGTACAAGGATATTGCATAGATATATTCCTTGCTGCCATAAAATTGCTTCCATATGCAGTTCAGTATAGGTTCATTCTGTTTGGAGATGGACATAAGAACCCAAGCTACTATGATCTTGTGAATATGATTACTTCTGATGCTTTTGATGCTGCTGTGGGTGACATAGCTATTGTTACTAACCGAACAAAGATTGTGGATTTTACTCAACCATATATAGAGTCAGGTTTAGTTGTGGTTGCTCCAGTTATAAAGTTGAAGTCAAGTGCTCGGGCTTTCTTGCGACCATTTACTCCACAGATGTGGGGTGTCACTGCACTTTTTTTCCTTGTTGTTGGAGCAGTGGTGTGGATTCTTGAACATAGAACAAACGATGAGTTTCGGGGGCCTCCAAAGAAGCAGATAGTTACCATCCTTTGGTTTAGTTTCTCAACCATGTTCTTTGCGCACAGTAAGTCCAACCATTTTGACAGTTCATGA 1971 0.4044 MQLVAYQYHSHRFWMILLCLALTLILLHGREEASSSRHDVVKIGAIFTLKTINGRVSKIAIEAAQKDVNSDPHFLGGRKLSIAIHDSNFSGFLGFIGALKFLVTDTVAIIGPQSSVMAHVLSHLANGLHVPLLSFTALDPTLTPLQYPFFVQTAPSDQFQMTAVADIISYFGWRQVIAIFSDDDQSRNGITVLGDKLADRRCKLSYKAALPPDPTATPADVTDQLVKIKSMEARVIVLNTFKQTGMMVFDVAQKLGMMSKGYVWIATSWLSTVLDSTSLALNTSNSIQGVLTLRPYTPQSSKKQAFISRWNHLSNGSIGLNPYGLYAYDSVWMIAHALKLFFDQNGTISFSNNTKLNGMKGETLDLGALNVFDGGKQLLDNILHINITGLTGPIQFGSDRSPLHPSYDILNVIGTGHRRIGYWSNYSGLSVIIPEKLQTKPANRSSSNQHLDGVIWPGNTTEMPRGWVFPNNGRQLRIGVPNRVSYRDMVSQINGTDAVQGYCIDIFLAAIKLLPYAVQYRFILFGDGHKNPSYYDLVNMITSDAFDAAVGDIAIVTNRTKIVDFTQPYIESGLVVVAPVIKLKSSARAFLRPFTPQMWGVTALFFLVVGAVVWILEHRTNDEFRGPPKKQIVTILWFSFSTMFFAHSKSNHFDSS. 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00018 656 Gene3D - 156 429 - -
Seca7g00018 656 CDD PBP1_GABAb_receptor_plant 42 431 IPR044440 -
Seca7g00018 656 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 41 642 IPR015683 -
Seca7g00018 656 Pfam Receptor family ligand binding region 59 414 IPR001828 -
Seca7g00018 656 FunFam Glutamate receptor 471 587 - -
Seca7g00018 656 Pfam Ligand-gated ion channel 597 647 IPR001320 GO:0015276|GO:0016020
Seca7g00018 656 SUPERFAMILY Periplasmic binding protein-like I 36 468 IPR028082 -
Seca7g00018 656 Gene3D - 587 655 - -
Seca7g00018 656 Gene3D - 471 586 - -
Seca7g00018 656 FunFam Glutamate receptor 156 313 - -
Seca7g00018 656 Pfam Ligated ion channel L-glutamate- and glycine-binding site 491 577 IPR019594 GO:0004970|GO:0016020
Seca7g00018 656 Gene3D - 59 404 - -
Seca7g00018 656 SUPERFAMILY Periplasmic binding protein-like II 454 600 - -
Seca7g00018 656 SMART GluR_14 477 655 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00018 Seca-Chr7 639962 642646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00018 13 650 Ion Channels AT4G35290 62.246 0.0 838
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00018 K05387 - gmx:100793969 1092.41