Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05325 ATGACAATTGCAGCAGCAACCTCATCAGTCACCATGAGCCTGAGCATGAGCCAAAACCACAGCCATGACGACACCATCACCTCAGCCATCCACGATGACAACAACAAGCCAGATGATCATGCGCACGACATGGTGATGCCTGGGTTTCGTTTCCACCCAACTGAAGAAGAGCTCGTGGAGTTCTACCTTCGCCGTAAGGTGGAGGGCAAGCGTTTCAATGTTGAGCTTATTACTTTCCTTGATCTTTATCGCTATGACCCTTGGGAGCTTCCTGCCTTAGCAGCAATTGGTGAGAAGGAGTGGTACTTTTATGTGCCTAGAGATAGAAAGTACCGCAACGGTGATCGTCCCAATCGTGTTACAACCTCTGGGTATTGGAAAGCAACAGGAGCCGATAGGATGATTCGAACCGAGAACTTCAGGTCTATCGGGCTGAAGAAAACCCTAGTTTTCTATTCTGGGAAAGCTCCAAAAGGCCTCCGAACCAGTTGGATCATGAATGAGTATCGTTTGCCTCAACATGAAACTGAAAGATATCAGAAGGCTGAGATATCACTTTGCCGTGTTTATAAGAGAGCTGGTGTGGAAGACCATCCCTCCCTCCCTCGTTGTCTCCCAACCCGGCCATCATCATCACATTCAGACATTAAGAATAAGCCAAATGAAACGGTTCACCTGAACATGGGATTTGTGGGCCATCCACAGAAAATTGATCATCAAAAACTGATGAATGAAAGCAGCAGCAGTACTGCAGGTGCAGCTGGGTCAGATGTCACTACTCCTGCTCTTGGGGGGCTAATTCCCAAGCACAATGCTTACCGTACACTTGGACTACCTGCAGTTCCAGTGGAGGAGATACTCATGCAGCAATCTAAGCAACCACAAGCAACCTTCTTCCCAGCGAACATTGCAATGATGGATGATCTCAATAGGCTGGTAAGTTATCAACAACAATTCTACAGTTTCCCCAATCAGTTCTCTAGTTTGCTAATGCAACCACCACCTGTGGCTCTAAACTCGCTACCCATCTCACTTCCAACCGCCTTCTCTGAACGACAGTGGGAGTGGAATCCAACCCCTGAGGCTGAGGCCAACCGAGAGGACAATAACACGCCCTTCAAGTAA 1125 0.48 MTIAAATSSVTMSLSMSQNHSHDDTITSAIHDDNNKPDDHAHDMVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGLRTSWIMNEYRLPQHETERYQKAEISLCRVYKRAGVEDHPSLPRCLPTRPSSSHSDIKNKPNETVHLNMGFVGHPQKIDHQKLMNESSSSTAGAAGSDVTTPALGGLIPKHNAYRTLGLPAVPVEEILMQQSKQPQATFFPANIAMMDDLNRLVSYQQQFYSFPNQFSSLLMQPPPVALNSLPISLPTAFSERQWEWNPTPEAEANREDNNTPFK. 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05325 374 Gene3D NAC domain 54 195 IPR036093 GO:0003677|GO:0006355
Seca6g05325 374 FunFam NAC domain-containing protein 35 54 195 - -
Seca6g05325 374 MobiDBLite consensus disorder prediction 355 374 - -
Seca6g05325 374 MobiDBLite consensus disorder prediction 25 39 - -
Seca6g05325 374 Pfam No apical meristem (NAM) protein 47 171 IPR003441 GO:0003677|GO:0006355
Seca6g05325 374 SUPERFAMILY NAC domain 45 191 IPR036093 GO:0003677|GO:0006355
Seca6g05325 374 ProSiteProfiles NAC domain profile. 45 192 IPR003441 GO:0003677|GO:0006355
Seca6g05325 374 MobiDBLite consensus disorder prediction 14 39 - -
Seca6g05325 374 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 43 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05325 Seca-Chr6 120146296 120148542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05325 1 219 NAC Transcription Factor Family AT2G02450 70.690 1.95e-113 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca6g05325 NAM 3.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05325 - - gmx:100812779 489.574