Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05318 ATGGCTTCAAATCATATATCAGCTGCAGGGGCAACCAATGATGCTTTATACAAAGAATTGTGGCATGCCTGTGCTGGACCCCTTGTCACTCTTCCTCGTGAAGGGGAGAGAGTTTATTATTTCCCACAAGGTCATATGGAACAGCTTGAGGCATCTATGAATCAGGGATTAGAGCAGCAAATGCCTTCCTTTAATCTGCCTTCTAAAATATTATGTAAAGTGGTCAATATTCATCTTCGGGCTGAACCTGAAACAGATGAAGTGTATGCACAGATAACTTTGCTTCCTGAAGCAGATCAAAGCGAGGTGACAAGCCCAGATGATCCTCTGCCTGAACCTCCAAGATGTACTGTCCATTCATTTTGCAAGACACTTACTGCTTCTGACACTAGCACTCATGGGGGTTTCTCTGTTCTTCGAAGACATGCAGATGATTGTTTGCCACCACTGGATATGACACAGCAGCCACCATGGCAAGAATTGGTTGCAACTGATTTGCATGGGAATGAATGGCATTTTCGGCATATTTTTCGAGGGCAACCCAGGCGCCACTTACTGACCACTGGGTGGAGTGTCTTTGTCAGTTCCAAAAAATTAGTGGCTGGTGATGCATTTATATTCTTAAGGGGTGAAAATGGAGAGCTCCGAGTTGGAGTTAGGAGGCTCATGAGACAGCAAAGCAACATGCCTTCTTCTGTTATATCTAGTCACAGTATGCATCTTGGTGTTCTGGCCACTGCATCTCATGCCATTTCAACTGGAACATTGTTTTCTGTATTTTACAAGCCCAGAACAAGCCGATCAGAGTTTATTGTGAGCGTCAACAAGTATCTTGAATCTCGAAATCATAAACTTTCTGTTGGGATGAGATTCAAAATGAGATTTGAGGGTGATGAAGTTCCTGAAAGAAGATTCAGTGGTACAATTGTGGGTGTTGAAGATAATAAATCATCTGTCTGGGCTGATTCCGAGTGGCGATCGTTAAAGGTTCAATGGGATGAACCATCATCAATTCTGCGACCTGATAGAGTTTCTCCATGGGAATTGGAGCCACTTGTGTCTACCCCTCCTGCAAATTCCCAGCCAACCCAAAGAAACAAGAGAACACGGCCACCCATTCTACCTTCAACAATGCCTGATTCTTCTCTGCAAGGCATATGGAAATCTCCAGTTGAATCTCCACCTTTCTCTTATCGTGACCCCCAACACGGACGAGATCTCTATCCATCACCCAAATTCAATTCTACTGCAAGCTTTCTTGGTTTTGGCGGGAATAGCTCTGCAGCCTCTGCTTCTAACAAGTCAATATATTGGTCTAGTAGGATGGAAAACTCAACAGAATCTTTTTCACCTGTAGCACTTAAAGAATCTGGTGAGAAGAGACAAGGCACTGGAAATGGCTGTAGGCTCTTTGGGATTCAGTTACGTGAGAATTCTAATGCAGAAGAAAGTCTGCCAACAGTCACTTTGTCTGGAAGGATGGGTGATGATAGGTCTGTTCCATCTTTGGATGCAGAGTCTGACCAGTATTCTGAACCATCAAATGTTAATCGATCTGATATTCCTTCAGTAAGTTGTGACGCTGAAAAATCATGCCTGCGGTCTCCCCAGGAGTCACAAAGCAGGCAAATAAGAAGCTGCACAAAGGTAGCATTACTGTTTTTAATGTTGGTGTAA 1677 0.4365 MASNHISAAGATNDALYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMNQGLEQQMPSFNLPSKILCKVVNIHLRAEPETDEVYAQITLLPEADQSEVTSPDDPLPEPPRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMTQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQSNMPSSVISSHSMHLGVLATASHAISTGTLFSVFYKPRTSRSEFIVSVNKYLESRNHKLSVGMRFKMRFEGDEVPERRFSGTIVGVEDNKSSVWADSEWRSLKVQWDEPSSILRPDRVSPWELEPLVSTPPANSQPTQRNKRTRPPILPSTMPDSSLQGIWKSPVESPPFSYRDPQHGRDLYPSPKFNSTASFLGFGGNSSAASASNKSIYWSSRMENSTESFSPVALKESGEKRQGTGNGCRLFGIQLRENSNAEESLPTVTLSGRMGDDRSVPSLDAESDQYSEPSNVNRSDIPSVSCDAEKSCLRSPQESQSRQIRSCTKVALLFLMLV. 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05318 558 FunFam Auxin response factor 284 356 - -
Seca6g05318 558 Pfam B3 DNA binding domain 121 221 IPR003340 GO:0003677
Seca6g05318 558 ProSiteProfiles B3 DNA-binding domain profile. 121 223 IPR003340 GO:0003677
Seca6g05318 558 CDD B3_DNA 119 221 IPR003340 GO:0003677
Seca6g05318 558 SUPERFAMILY DNA-binding pseudobarrel domain 110 250 IPR015300 -
Seca6g05318 558 Gene3D - 284 356 - -
Seca6g05318 558 MobiDBLite consensus disorder prediction 354 386 - -
Seca6g05318 558 MobiDBLite consensus disorder prediction 482 522 - -
Seca6g05318 558 FunFam Auxin response factor 119 223 - -
Seca6g05318 558 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 551 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca6g05318 558 MobiDBLite consensus disorder prediction 350 386 - -
Seca6g05318 558 Gene3D - 118 223 IPR015300 -
Seca6g05318 558 Pfam Auxin response factor 247 329 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca6g05318 558 SMART B3_2 121 223 IPR003340 GO:0003677
Seca6g05318 558 MobiDBLite consensus disorder prediction 504 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05318 Seca-Chr6 120040676 120048065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05318 2 552 B3 DNA Binding Superfamily AT1G59750 72.432 0.0 801
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca6g05318 B3 9.4e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05318 K14486 - gmx:100793224 1014.6