Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05315 ATGGAAATAGAGGAGAGGATGGAGAGAGGAATGTCTGATTCTGATCATAAAGAGCCATTGCTTATGAGGAATGATCATAGGATCAATAACACTTCCCAACTCGCCATTGTTGGAGCCAATGTTTCTCCCATTCAGAGCCTTGATTATGAGATTATTGAGAATGATCTTTTTAAGCAGGACTGGAGATCTAGGACAAAGATTGAGATATATCAGTATATTGTCCTCAAGTGGACCCTTGCACTTCTTATTGGTTTATTTACTGGGCTTGTTACCTTCTTTAATACCCTTGGAGTTGAGAATATTGTTGGTTTCAAGCTTTTACTCACCAAGGATCTCATGCTCAAGCAAAAGTATCATCAAGCTTTTGCAGTGTTTTTTGGTTGTAACATGATTTTAGCAATTGCGGCTGCAGCCCTGTGTGCGTACATTGCCCCTGCAGCAGCAGGGTCTGGCATACCTGAGGTGAAAGCATACCTCAATGGTATAGATGCACACACTATATTGGCTCCAAGTACCCTATTTGTAAAGATTTTTGGTTCAATTTTTGGTGTTGCGGCGGGATTTGTTGTGGGTAAAGAAGGACCTATGGTTCATACGGGTGCTTGCATAGCTAATTTACTTGGACAAGGCGGTTCTAGAAAATATGGCCTGACGTGGAAATGGCTTAGATACTTTAAAAATGACAGAGATCGAAGGGATTTGATCACATGTGGTGCAGCTGCTGGTGTTGCTGGTGCCTTTCGTGCCCCAGTTGGTGGTGTCCTTTTTGCACTTGAAGAAGCAGCTTCATGGTGGAGGAGTGCTCTTCTGTGGCGCACTTTCTTTACAACGGCTGTAGTAGCTGTAGTGCTGAGAGCTCTAATACAAGTGTGTGAGGGAGGAAAATGTGGTCTTTTTGGGAAAGGAGGTCTCATAATGTTTGATGTTAATTCAGCGAAGCCTGTGTACAACATACCTGACCTACTCGTAGTTATATTTCTTGGAGTTATAGGAGGTCTTATGGGAAGCCTTTACAATTTTCTTGTGGATAAGGTCCTTCGCACTTACAGTCTTATAAATGAGAGAGGCCCAATATTCAAAATTCTAGTTGTGATGATCGTCTCCCTTGTGACGTCTAGTATTCGGTTCGGGCTTCCATTGTTATCAAAGTGCATCCCTTGTCCGGGGCCAGGGGGGGATCAGTGCCCAAGCCCAACTGTAGGGTTCTTCTCAATACACTACAAGAATTTTCAATGTCCACCTAACCACTACAATGACCTTACCTCTCTTTTTTTCACCACTAACGATGATGCTATTCGTAACCTATTCATTGCTGGATCTGACAATAGATTTCAACTTTCTAGTCTTGTAATTTTCTTTGTGGCCATATACTCTCTTGGAATTATCACTTATGGTGTTGCCATTCCCTCTGGGCTCTTTATTCCTGTCATACTTGCTGGAGCTTCCTATGGGCGCCTTGTAGGGAGTCTCTTAAGTCCATTCACTGTTCTTGATGCGGGATTGTTTGCCCTCCTTGGTGCTGCATCCTTTCTCGGCGGTACCATGAGAATGACTGTTTCCCTTTGCATCATACTTCTTGAGCTCACTGATGACCTATTGATGCTCCCCTTGGTTATGCTAGTTCTCCTCATTTCAAAGTCTGTAGCTGATTCTTTTAACAAAGGTGTTTATGATCAGATTGTGGAAATTAAGGGGCTACCTTATATGGAGGCACACGCAGAGCCATATATGAGGCATTTAGCTGCTAGTGATGTTGTTTCTGGCCCCTTGTTTACTTTTTCTGGGGTTGAAAAAGTGGCTAATATTGTGCATGCCTTAAAGATCACACGACATCATGGCTTTCCTGTAATTGACGAGCCTCCTTTCTCGGATGCGCCTGAGTTGTGTGGATTGGTATTGAGGTCACACCTTCTTCTACTTCTTAAGAATAGGACATTCTCGAGGCAGAGGGTGATGACAGGGTCTACCATTATGAGGAGCTTTAAGGCGCATGATTTTGCAAAGCCAGGTTCAGGCAAAGGGCTAAAGCTACAGGATTTAGACATTACACAAGACGAAATGGAAATGTTTGTTGATCTTCATCCAATTACTAATACCTCGCCATATACAGTAGTGGAAACAATGTCTCTTGCAAAAGCTGCTATTCTTTTTCGGGAGCTTGGCCTTAGGCACTTGTTGGTTGTGCCCAAGACACCAGGAGTAAGTAGGCCTCCGATTGTTGGGATCCTGACAAGGCATGACTTCATGCCTGAGCATGTCCTGGGACTATTCCCTCACTTGAAACCCCACAAGTAG 2295 0.4357 MEIEERMERGMSDSDHKEPLLMRNDHRINNTSQLAIVGANVSPIQSLDYEIIENDLFKQDWRSRTKIEIYQYIVLKWTLALLIGLFTGLVTFFNTLGVENIVGFKLLLTKDLMLKQKYHQAFAVFFGCNMILAIAAAALCAYIAPAAAGSGIPEVKAYLNGIDAHTILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSRKYGLTWKWLRYFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRALIQVCEGGKCGLFGKGGLIMFDVNSAKPVYNIPDLLVVIFLGVIGGLMGSLYNFLVDKVLRTYSLINERGPIFKILVVMIVSLVTSSIRFGLPLLSKCIPCPGPGGDQCPSPTVGFFSIHYKNFQCPPNHYNDLTSLFFTTNDDAIRNLFIAGSDNRFQLSSLVIFFVAIYSLGIITYGVAIPSGLFIPVILAGASYGRLVGSLLSPFTVLDAGLFALLGAASFLGGTMRMTVSLCIILLELTDDLLMLPLVMLVLLISKSVADSFNKGVYDQIVEIKGLPYMEAHAEPYMRHLAASDVVSGPLFTFSGVEKVANIVHALKITRHHGFPVIDEPPFSDAPELCGLVLRSHLLLLLKNRTFSRQRVMTGSTIMRSFKAHDFAKPGSGKGLKLQDLDITQDEMEMFVDLHPITNTSPYTVVETMSLAKAAILFRELGLRHLLVVPKTPGVSRPPIVGILTRHDFMPEHVLGLFPHLKPHK. 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05315 764 Pfam Voltage gated chloride channel 133 550 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca6g05315 764 CDD ClC_6_like 45 569 - -
Seca6g05315 764 PRINTS Plant CLC chloride channel signature 293 300 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca6g05315 764 PRINTS Plant CLC chloride channel signature 275 285 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca6g05315 764 PRINTS Plant CLC chloride channel signature 261 269 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca6g05315 764 PRINTS Plant CLC chloride channel signature 420 436 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca6g05315 764 PRINTS Plant CLC chloride channel signature 50 58 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca6g05315 764 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 22 754 - -
Seca6g05315 764 Gene3D - 569 750 IPR046342 -
Seca6g05315 764 Pfam CBS domain 698 748 IPR000644 -
Seca6g05315 764 Gene3D Clc chloride channel 68 568 - -
Seca6g05315 764 ProSiteProfiles CBS domain profile. 696 762 IPR000644 -
Seca6g05315 764 SMART cbs_1 700 753 IPR000644 -
Seca6g05315 764 SMART cbs_1 589 642 IPR000644 -
Seca6g05315 764 PRINTS Chloride channel signature 240 259 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca6g05315 764 PRINTS Chloride channel signature 518 537 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca6g05315 764 PRINTS Chloride channel signature 145 162 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca6g05315 764 PRINTS Chloride channel signature 176 195 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca6g05315 764 PRINTS Chloride channel signature 556 570 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca6g05315 764 PRINTS Chloride channel signature 500 516 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca6g05315 764 PRINTS Chloride channel signature 468 488 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca6g05315 764 SUPERFAMILY Clc chloride channel 54 571 IPR014743 -
Seca6g05315 764 CDD CBS_pair_voltage-gated_CLC_euk_bac 582 751 - -
Seca6g05315 764 SUPERFAMILY CBS-domain pair 573 749 IPR046342 -
Seca6g05315 764 FunFam Chloride channel ClC3 68 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05315 Seca-Chr6 119995978 120006570 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05315 5 764 Ion Channels AT5G49890 76.016 0.0 1131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05315 K05016 - cave:132178584 1137.48