Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05310 ATGATGTCTGAAGAGGCTGGATCCATGTTGGTAGTTTATGATGATCCCTCTGACCAACACTCACTATCGTTGGGTGATACAAGCAGCACAGAGGAGTCACCTGATGAAACCAGGCTCTCCTTGGAAACAACTAATGATGCTATTCCATATATTGGTCAAAGGTTTGCCACTCATGATGCTGCTTATGAATTCTATAGTGAATTTGCCAAGAGGTGCGGCTTCTCAATTAGACGTCACCGTACAGAGGGAAAAGATGGGGTTGGAAAAGGACTTACTAGACGCTACTTTGTTTGTCACCGTGCTGGCAACACTCCTGTCAAAACATCAACTGAAAGTAAACCTCAAAGAAATAGAAAATCTTCTCGATGTGGGTGTCAGGCTTACATGCGGATAAGCAAAACAACAGAATTTGGAGCTCCAGAATGGCGTGTGACTGGATTTGCTAATCACCATAATCATGAACTTCTAGAACCAAACCAAGTTCGATTCCTTCCTGCATACAGGACTATCTCTGATGCTGACAAAAACCGAATCCTTATGTTTGCCAAAACAGGGATTTCTGTTCATCAAATGATGAGGCTTATGGAGCTCGAGAAGTGTGTGGAACCTGGATATTTGCCTTTTACTGAAAAGGATGTAAGGAATTTACTTCAGTCATTTAGGAAATTAGATCCAGAGGAAGAAAGCTTAGATTTATTAAGAATGTGCAGAAATATTAAGGAGAAAGATCCTAATTTTAAATTTGAGTACACACTTGATACAAACAACCGTTTGGAGAATATTGCCTGGTCATATGCCTCATCAATCCAATTGTACGATATGTTTGGTGATGCCGTGGTGTTTGATACAACACATCGCCTGACTGCATTTGACATGCCGCTAGGGATATGGGTTGGAATTAATAATTATGGAATGCCTTGCTTTTTTGGCTGTGTGCTTCTACGAGATGAAACTGTCAGATCATTTTCCTGGGCAGTGAAGGTTTTCTTAGGGTTTATGAACGGGAAGGCTCCACAGACTATATTAACTGATCAAAATATATGTCTCAAAGAAGCACTATCCACAGAAATGCCAGCAACAAAACATGTTTTCTGCATATGGATGATAGTAGCGAAGTTTCCATCTTGGTTTAATGCTGTTCTAGGGGAACGATACAATGAATGGAAGGCTGAATTTTATAGACTTTATAATCTTGAGTCAGTTGAGGATTTTGAACTAGGCTGGAGGGAAATGGTTTGTTCCTTTGGGCTGCATTCCAATCGACACGTGGTTAATTTGTATAGCTCACGGTCACTTTGGGCATTGCCATTTTTGAGAAGCCATTTTCTTGCGGGAATGACTACAACTGGTCAGTCAAAGTCAATTAATGCTTTCATTCAACGGTTTCTGAGTGCACAGACACGGCTAGCTCACTTTGTTGAACAGGTAGCTGTTGCTGTGGATTTTAAAGATCAAACTGGAGAACAACAAACCATGCAGCAGAATCTCCAAAATGTTTGCCTCAAAACAGGCGCCCCCATGGAATCACACGCTGCCACCGTCCTCACTCCCTATGCCTTTTCAAAGCTTCAAGAGCAACTTGTGTTGGCTGCACACTATGCGTCTTTTTCAATTGAAGATGGATTTCTTGTGAGACACCACACAAAAGCTGAAGGAGGTCGGAAAGTTTATTGGTCCCCTCAGGAGGGAATTATAAGTTGCAGCTGCCACCAGTTTGAATTCTCTGGAATTCTATGTAGGCATTCTCTTAGAGTTCTTTCAACAGGAAATTGTTTTCAGATCCCAGATAGATATCTTCCCATTCGTTGGCGTCGTATGAGCATGCCCTCTTCTAAGCTTCTTCAAAATGCACCAAGTGATCATGCTGAAAGAGTTAAGTTATTACAAAATATGGTTTCATCTCTGATTACAGAATCTGCTAAATCTAAGGAACGATTAGATATTGCAACAGAACAAGTTTCCATCATTCTGTCTCGCATAAGAGAGCAACCAATTTCATTACAAGGTAGCAGGGATATTTCTTCCATTAATAGGAATCTTTGA 2043 0.4092 MMSEEAGSMLVVYDDPSDQHSLSLGDTSSTEESPDETRLSLETTNDAIPYIGQRFATHDAAYEFYSEFAKRCGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPVKTSTESKPQRNRKSSRCGCQAYMRISKTTEFGAPEWRVTGFANHHNHELLEPNQVRFLPAYRTISDADKNRILMFAKTGISVHQMMRLMELEKCVEPGYLPFTEKDVRNLLQSFRKLDPEEESLDLLRMCRNIKEKDPNFKFEYTLDTNNRLENIAWSYASSIQLYDMFGDAVVFDTTHRLTAFDMPLGIWVGINNYGMPCFFGCVLLRDETVRSFSWAVKVFLGFMNGKAPQTILTDQNICLKEALSTEMPATKHVFCIWMIVAKFPSWFNAVLGERYNEWKAEFYRLYNLESVEDFELGWREMVCSFGLHSNRHVVNLYSSRSLWALPFLRSHFLAGMTTTGQSKSINAFIQRFLSAQTRLAHFVEQVAVAVDFKDQTGEQQTMQQNLQNVCLKTGAPMESHAATVLTPYAFSKLQEQLVLAAHYASFSIEDGFLVRHHTKAEGGRKVYWSPQEGIISCSCHQFEFSGILCRHSLRVLSTGNCFQIPDRYLPIRWRRMSMPSSKLLQNAPSDHAERVKLLQNMVSSLITESAKSKERLDIATEQVSIILSRIREQPISLQGSRDISSINRNL. 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05310 680 Pfam SWIM zinc finger 561 588 IPR007527 GO:0008270
Seca6g05310 680 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 45 654 IPR031052 GO:0006355
Seca6g05310 680 Pfam MULE transposase domain 279 371 IPR018289 -
Seca6g05310 680 ProSiteProfiles Zinc finger SWIM-type profile. 554 590 IPR007527 GO:0008270
Seca6g05310 680 SMART 26again6 565 592 IPR006564 GO:0008270
Seca6g05310 680 MobiDBLite consensus disorder prediction 1 39 - -
Seca6g05310 680 Pfam FAR1 DNA-binding domain 63 156 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05310 Seca-Chr6 119956243 119959370 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca6g05310 MULE 1.5e-17 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05310 - - gmx:100810717 1334.32