Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05309 ATGGGTGCAATGTGGCAATCTGTGTCCCCTAAAGTTAATGAATGGATGAAGGGTAAAGTGGTTGGATGTGGATCTTTTGGCACTGTCCATTTGGCGATGAACAAATCCACCGGTGGACTCTTCGTTGTGAAATCATCACATTCAGGGGCTGGGTGTGAGGCTTTGGATAATGAGGTCAAAATTCTAAAGACTCTAAAATCATCACCCTACATTGTCCAATGTTTAGGGACAGAGGAGGAGGAGGAAGGTGATCTCAATGTTTTTATGGAGTATATGGCAGGTGGTAGTTTGGCAGAAGTGGCACAAAAGTTTGGTGGTTCATTGCATGAAGAGGTGGTTCGGGTGTATACTAGAGAAATTCTTCATGGGTTAAAGCATCTTCACCAACGTGGTATTGTGCATTGTGACCTTAAGTGCAAGAATGTGCTTTTGGGCTCATCTGGGAACATCAAGCTAGCAGATTTTGGATGTGCAAAAAGGGTAAAGGACTTGAAGGGGAAGGGTTTGGTTTGTATTGGTGGCACTCCTCTATGGATGGCTCCTGAAGTATTGAGAAATGAGATGCTTGATTTTACTGCAGATATATGGTCTTTGGGATGTACAGTCATTGAAATGGCTACTGGTAACCCTCCTTGGGCTGAAGAGGGTTCAGATCCAAATCCAATGGCTACTTTACTCAAGATTGCACATGGAGATGGGGATGGGATACCTCAGTTTCCAACCCATTTCTCTAACCAAGGTTTGGATTTCTTGAGCAGGTGTTTGGTGAGAGAACCCAATAAGAGGAGTACAACCGAGGAGTTACTTGCTCATCCATTTGTTTCTTCAACAACTCAGAGTCAGAGTCAGAAAGAATATGCTTCCTCCCCAGCAGGTGTCTTGGAGTTTCAAGATTTTGATGAATTAGAAAGTCCACCAGGAAATGATTTCTCAATCAGAAACTCATTTTCGTACTATGATGCTCCAGAACCAATGTGGCAACTGGAGGAATTAGGGTCATCGGGGAATTGGATTACTATTAGTTTCATAATGTCTGGCTTCGAGCTTGCAGCCCCTGCTGTTGCAGAGGTGGGGGCATTTGGGGTTAGAGAATTATATACTAACATCCGCAGCAAAGTTGCATCTTCCAAAAATCTGGAGGAAAATTATTACATTTTGGTCAAAGATATGAAGATTCTACTTGCAATAAAGGAGGATAAAGAGACCAAAGTTCAAAGAAACAAGCAGAAAGATACCACCAATGCATACAAGCTATGGACAAACATGGTATCAGAGGCTGAAGGAGAAGTGCTGAAACTGAAAACTAAATATGAGACAAAAAGCCTACCCTGGTGGCGTATTCAAAGACGTTCACGCCTGAGTGAAGAGATGGCTAAAAAGTGCTACCGTGTTCGTGAACTTATGAAAGATGAACATTCAAGAGATTTTCTGGTTGATAAACTCCCAGAGCGTGTCTTAAAGGAGTTAGGTGTTCCACAGATAAGTGGATATCCAACCCTACAAACTGCCTTGCAAAAGATTCTGAGTTTGCTCAAAAATAGTAACATCAGAGTCATTGGAGTGAGTGGAACAAAAGGGGTGGGGAAAACAACCATATTGCAGAACCTAAACAACAATGAAGAGGTTGCTCAACGGTTTGATATTGTCATTTTTGTGAGAGACACAGCTGATGATAGGCTTCAACTTCAAGGGAAGATTGCAAATCGATTGATGCTGGACATCAAGGACCATAGCATTAGCCATGAAGTCGCAAGATCAATACACAAAGAGCTAGAGAACAAAAAGTATTTACTGATTTTGGATGAGGTTATAGGCCCCATTGATTTGGAGCAGTTGGGAATCCCAAGTGATAAAAATGGCAGTAAGGTGGTGATTGCCACACAATTCCCTCGAGATTGTAAGTTGAGTGGGGTGGAAAGGTTCATCCAAGTGAAACCACTATCTCCAGAAGAAGCATGGAACATGTTTAGAGACACAGTTTGTGGCCGTGGAGTTAGTTCTAAGATTGATTCCCCTGATATTCAACCCATTGCTAGACTTGTATGCAACAGGTGCTCTCGTCTTCCACTTCTCATTCACAAAATAGCAAATTCTTTTAAATTGAAAGACTCTGCTTCTAGTTGGTGGGCAGGACTTGAGGATCTTAAACCATGGCCACAACTTCAAAATCAAGGTTTGAATGAGTTGTACTCATGTCTAAAATTCTGTTATGATGAACTGAAAGATGAAAAGAAGCAGAAATGCTTTCTGTACACATCATTGTATCCCACAGATAGCAAGGTTTACACTGATTATTTAGTGGAGTGTTGGGCAGCGCAAGGCTTGCTTGGTGATATAAATGATACAAGGCGATACCAAAGTGCACGCAACTGTGGTATTGACATATTAGAGCACCTTGCTGATGTCTCTTTACTAGAGAAGGGGGAACGAATGATATATGTCAGGATGAATGACTGCATGAGACAACTTGCATTATTCATATCCTCTAAAGATCCTCAGTGTAGCTTTTATCTCCAAGACCAAGATAGTGAAGAATCCGGAAATCTCTCACATGTAGTAAGAGCTTCGCAGCAGGTTAGGTGGCTCTCTATGATTGATAGAAAACTGCTCCATTTACCAACAAACCAGGATTTCAGCATGCTTTTGACATTGTTGCTGCAGAAAAATCCAGAGCTGACTACAATACCACAAACTTTTTTTGAGAACATGAGCACTCTGCTCCTATTAGACTTGTATGGTACCGGAATTAGACAGCTTCCATCATCTCTATCAAAGTTGACCAGTCTTAGGGGTTTATTCCTGAACAGTTGTGTGCTCTTAAGGTCATTGCCATCTGAAATAGGATCACTTCAACTGCTAGAGGTCCTTGACATTCTTGACACCAAAGTGACTTTCATACCTATCCATATTGGATGTTTGATTAATCTAAGATGCTTGAGAATCCCATTCATTGCAAGTGATGAACCAAATGAAGTTCAAAATGTTAGTGTGATTTCAAAGCTCCACAGGTTAGAAGAATTAACCATTCAAGTCATATCCTATGAGCAATGGTGTAATGATGCTGAAAGTGTCCTGCAACAGGTGGCTTTGTTGAAAAATCTAACTACCCTCAGATGCTGCTTTCCCTCCCCAATCATTCTTCAGAGCTTTCTTTCGAGAAGCAAATCATGGAGAAATTGTAAGAAGCAAAATTCATTCAGATTCTTCGTGGGATGCCAAAACTCAAGACGGCCTCAAATACTTGAATCTTTTGAGTATAAAATTACAAATTATTTGAAGTATTGCAATGGTGAACAGAAGGATGACTTGGCAATTAGTGAGATACTACCAAATACTGATGCTTTGGAATTAATTTTCCACAAAGATATCAAACAGTTATTAAACTTTCGTGGAACAAGATTTTTGAATCGCATCCGTGGTCTTTTGATTGAAAAATGCAACAAAGTTTCCACAGTTGTGGCAGGCTCCATCCCCATGAATGGAATCCAAACAGAAAACAGAGCCATCTTGCCAAATTTGGAGCAATTATATTTGGAAAATTTGCTCAATTTAAAATGTGCTTTTAAGGGTCCCTTGCAAAATGGAACCCTTTCCAAATTACAAACTTTGTCGTTGAAGAACTGTCCATTCCTGAGTGAAATTTTCAGCAATGGAGCAATTCAATATTTTCCAGAACTTCAGAAGCTGAAAATTGAAGGTTGTTCAAAAATTGAAGAACTTATCGTACTTAGAGGAGCAACTGATGGAGAAAGGGACGTGCTTCCAAAACTAGAGATTTTACTGCTGGTTAACTTGCCTAACTTTGAAAGAATATGCTCAACCCAGACATTGGCTTGGTCCTCTTTGGAGCTATTAAGGGTATATGGATGTCCTAATTTGAAAACTTTACCATTTGACACTGACAATGCAGCCAACTTGAGGTCCATTGAAGGGCAGCAAGCATGGTGGGATGAGTTGGAATGGACAAACAATGACGAGGTCTATCAGCGGTTACAACCTATATTTGTTGCCTCCAATGAGTATTTTCCTTAG 4032 0.406 MGAMWQSVSPKVNEWMKGKVVGCGSFGTVHLAMNKSTGGLFVVKSSHSGAGCEALDNEVKILKTLKSSPYIVQCLGTEEEEEGDLNVFMEYMAGGSLAEVAQKFGGSLHEEVVRVYTREILHGLKHLHQRGIVHCDLKCKNVLLGSSGNIKLADFGCAKRVKDLKGKGLVCIGGTPLWMAPEVLRNEMLDFTADIWSLGCTVIEMATGNPPWAEEGSDPNPMATLLKIAHGDGDGIPQFPTHFSNQGLDFLSRCLVREPNKRSTTEELLAHPFVSSTTQSQSQKEYASSPAGVLEFQDFDELESPPGNDFSIRNSFSYYDAPEPMWQLEELGSSGNWITISFIMSGFELAAPAVAEVGAFGVRELYTNIRSKVASSKNLEENYYILVKDMKILLAIKEDKETKVQRNKQKDTTNAYKLWTNMVSEAEGEVLKLKTKYETKSLPWWRIQRRSRLSEEMAKKCYRVRELMKDEHSRDFLVDKLPERVLKELGVPQISGYPTLQTALQKILSLLKNSNIRVIGVSGTKGVGKTTILQNLNNNEEVAQRFDIVIFVRDTADDRLQLQGKIANRLMLDIKDHSISHEVARSIHKELENKKYLLILDEVIGPIDLEQLGIPSDKNGSKVVIATQFPRDCKLSGVERFIQVKPLSPEEAWNMFRDTVCGRGVSSKIDSPDIQPIARLVCNRCSRLPLLIHKIANSFKLKDSASSWWAGLEDLKPWPQLQNQGLNELYSCLKFCYDELKDEKKQKCFLYTSLYPTDSKVYTDYLVECWAAQGLLGDINDTRRYQSARNCGIDILEHLADVSLLEKGERMIYVRMNDCMRQLALFISSKDPQCSFYLQDQDSEESGNLSHVVRASQQVRWLSMIDRKLLHLPTNQDFSMLLTLLLQKNPELTTIPQTFFENMSTLLLLDLYGTGIRQLPSSLSKLTSLRGLFLNSCVLLRSLPSEIGSLQLLEVLDILDTKVTFIPIHIGCLINLRCLRIPFIASDEPNEVQNVSVISKLHRLEELTIQVISYEQWCNDAESVLQQVALLKNLTTLRCCFPSPIILQSFLSRSKSWRNCKKQNSFRFFVGCQNSRRPQILESFEYKITNYLKYCNGEQKDDLAISEILPNTDALELIFHKDIKQLLNFRGTRFLNRIRGLLIEKCNKVSTVVAGSIPMNGIQTENRAILPNLEQLYLENLLNLKCAFKGPLQNGTLSKLQTLSLKNCPFLSEIFSNGAIQYFPELQKLKIEGCSKIEELIVLRGATDGERDVLPKLEILLLVNLPNFERICSTQTLAWSSLELLRVYGCPNLKTLPFDTDNAANLRSIEGQQAWWDELEWTNNDEVYQRLQPIFVASNEYFP. 1344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05309 1343 SMART serkin_6 15 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05309 1343 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 494 751 IPR027417 -
Seca6g05309 1343 Gene3D - 479 635 IPR027417 -
Seca6g05309 1343 ProSiteProfiles Protein kinase domain profile. 15 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05309 1343 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Seca6g05309 1343 Gene3D - 737 825 IPR036388 -
Seca6g05309 1343 CDD STKc_MAPKKK 14 274 - -
Seca6g05309 1343 SUPERFAMILY Protein kinase-like (PK-like) 13 298 IPR011009 -
Seca6g05309 1343 SUPERFAMILY L domain-like 813 1310 - -
Seca6g05309 1343 PRINTS Disease resistance protein signature 590 604 - -
Seca6g05309 1343 PRINTS Disease resistance protein signature 1195 1211 - -
Seca6g05309 1343 PRINTS Disease resistance protein signature 518 533 - -
Seca6g05309 1343 PRINTS Disease resistance protein signature 685 699 - -
Seca6g05309 1343 Gene3D Ribonuclease Inhibitor 1109 1321 IPR032675 -
Seca6g05309 1343 Gene3D Ribonuclease Inhibitor 830 1084 IPR032675 -
Seca6g05309 1343 Gene3D Transferase(Phosphotransferase) domain 1 8 304 - -
Seca6g05309 1343 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 13 316 - -
Seca6g05309 1343 Pfam Protein kinase domain 17 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05309 1343 Pfam NB-ARC domain 504 739 IPR002182 GO:0043531
Seca6g05309 1343 Gene3D - 647 736 IPR042197 -
Seca6g05309 1343 Pfam Leucine rich repeat 883 938 IPR001611 GO:0005515
Seca6g05309 1343 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05309 Seca-Chr6 119948049 119953442 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05309 14 340 MAP Kinase Kinase Kinase AT3G50310 37.714 4.11e-63 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca6g05309 Pkinase 8.3e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05309 - K13459 gmx:102668045 1426.38