Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05306 ATGTTTCCTATCTTACTGCAGATTGGGCAAGGAACTTACAGCAGTGTTTACAGGGCTCGTGATCTTGAAACAAACAAAATTGTCGCATTGAAGAAGGTTCGATTTGCTAACATGGACCCAGAAAGTGTTCGTTTTATGGCAAGAGAAATTCTTGTGCTGCGAAGACTTGATCATCCAAATGTCATGAAGCTTGAAGGCATGATTACTTCAAGGGTTTCTGGTAGCTTGTACCTTGTTTTTGAATATATGGAGCATGATCTTGCAGGCCTTGCAGCAATACCAGGCATCAAGTTTACTGAATCACAGATCAAGTGTTATATGCAACAGCTTCTTCGTGGTCTTGAGCATTGTCACAGTCGTGGTGTTATGCACCGTGACATCAAGGGATCCAATCTTCTGCTTGACAATAATGGCAATCTGAAGATTGGTGATTTTGGGCTTGCCACTTTGTTTCAGCCATCTCAAGGGCAGCCTTTAACAAGTCGTGTAGTGACCTTGTGGTATCGACCACCTGAACTTTTACTTGGAGCTACAGATTATGGAGTTGCTGTGGATTTGTGGAGTGCTGGTTGTATTCTTGCAGAATTGTTTGCTGGGAAGCCTATAATGCCTGGAAGAACAGAGGTGGAGCAACTTCATAAAATCTTCAAACTTTGTGGATCTCCTTCTGAAGAATATTGGAAGAAGTCAAAGCTACCACATGCAACAATTTTCAAGCCTCAACAACCTTACAAACGTGTTGTTTCTGAGACATTCAAGGATTTTCCTTCATCAGCACTGAGCCTCTTGGAGCTCCTACTTGCTATAGAACCAAAAGATCGAGCAACTGCATCTTTAGCCCTTCAAAATGAGTTCTTCACAGCAAAGCCACTTCCTTGTGATCCATCAACTTTGCCAAAATACCCACCAAGTAAAGAGTTTGATGCCAAACTTCGAGAAGAGGAAGCTAGAAGACAAAGAGCTGCAAATAAAGGACATGGACAAGAATCAGTTAGCAGGAGTTCAAGAGAGTCTAAAGCTAGGCCAGCACCTGATGCTAATGCTGAGTGTCAGGCATCAATAGAGAAGAGACAAGGACAGTGTAATTCTAAGTGCATTAGTGAGAAGTACAATTCTGAAGAGGATGGCGGTTGTGGCTTCCCTCTTGAACCTACAAAGTCAAGAGCACTCAATGTTTTCTCTCATTCTGGCCAGTCAATGCATCCAAGTGCATATGGATCCTCACGCAATATGAACTTAAAAGAGGAAGATGTTCTTACTGGCCCTAATCATGTCTTTACATCAAGAAACCCTGAGTTGAGAAAACAAAAATCCTACTGGCATGGCAGCACTGCAAAATTGTCAAGATTTTCTAATTCAGTTGCAACTCGAGGTAATTCACGACTTGATATGAGTGGAAACTGTAGTGTGAATTCAGAGTGGCCAGAGAATCACTTCGGTATGAGATATAGTCATCTAGCTGATGGTGAGTCCAGCCAATTGCTGGATGGACCCAAGTCTTCACGCAAGAAGGACCGTGCCATGAGCTATGCTACCAAAAGCCGCATCCACTATTCCGGACCATTGCTGCCTCCAGAGGATAATCTTGAAGAAATGCTTAAGGAGCACGAAAGGCAAATCCAACAGGCTGTCCGCAAAGCTCGTTTGGACAAGGACAAGATAAAAAAGGCTGACAGTGAGAATAGCCTAACTGAATCACTATTTCACCATGTGAGAAATCACAGCTGA 1728 0.4294 MFPILLQIGQGTYSSVYRARDLETNKIVALKKVRFANMDPESVRFMAREILVLRRLDHPNVMKLEGMITSRVSGSLYLVFEYMEHDLAGLAAIPGIKFTESQIKCYMQQLLRGLEHCHSRGVMHRDIKGSNLLLDNNGNLKIGDFGLATLFQPSQGQPLTSRVVTLWYRPPELLLGATDYGVAVDLWSAGCILAELFAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQQPYKRVVSETFKDFPSSALSLLELLLAIEPKDRATASLALQNEFFTAKPLPCDPSTLPKYPPSKEFDAKLREEEARRQRAANKGHGQESVSRSSRESKARPAPDANAECQASIEKRQGQCNSKCISEKYNSEEDGGCGFPLEPTKSRALNVFSHSGQSMHPSAYGSSRNMNLKEEDVLTGPNHVFTSRNPELRKQKSYWHGSTAKLSRFSNSVATRGNSRLDMSGNCSVNSEWPENHFGMRYSHLADGESSQLLDGPKSSRKKDRAMSYATKSRIHYSGPLLPPEDNLEEMLKEHERQIQQAVRKARLDKDKIKKADSENSLTESLFHHVRNHS. 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05306 575 Gene3D Phosphorylase Kinase; domain 1 1 89 - -
Seca6g05306 575 SUPERFAMILY Protein kinase-like (PK-like) 4 293 IPR011009 -
Seca6g05306 575 MobiDBLite consensus disorder prediction 311 351 - -
Seca6g05306 575 Coils Coil 304 324 - -
Seca6g05306 575 MobiDBLite consensus disorder prediction 311 343 - -
Seca6g05306 575 MobiDBLite consensus disorder prediction 497 511 - -
Seca6g05306 575 PANTHER CELL DIVISION PROTEIN KINASE 4 292 - -
Seca6g05306 575 FunFam probable serine/threonine-protein kinase At1g54610 85 326 - -
Seca6g05306 575 ProSitePatterns Protein kinases ATP-binding region signature. 8 31 IPR017441 GO:0005524
Seca6g05306 575 SMART serkin_6 2 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05306 575 Pfam Protein kinase domain 7 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05306 575 FunFam probable serine/threonine-protein kinase At1g54610 1 84 - -
Seca6g05306 575 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
Seca6g05306 575 Gene3D Transferase(Phosphotransferase) domain 1 90 326 - -
Seca6g05306 575 MobiDBLite consensus disorder prediction 490 511 - -
Seca6g05306 575 MobiDBLite consensus disorder prediction 543 575 - -
Seca6g05306 575 ProSiteProfiles Protein kinase domain profile. 2 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05306 575 Coils Coil 526 553 - -
Seca6g05306 575 CDD STKc_CDK9_like 2 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05306 Seca-Chr6 119915727 119919681 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05306 2 324 Core Cell Cycle Gene Families AT5G10270 51.479 2.04e-114 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Seca6g05306 Pkinase 4.8e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05306 - - gmx:100805055 928.317