Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05302 ATGGGTGTCTCAAATAAAACTCCCGAATTTCTCAAGATGAATCCTATTGGAAAGGTTCCTGTGTTACAAACGCCAGATGGTCCAATCTTTGAGAGCAATGCCATGGCTCGTTACGTTGCTCGATTGAAGGGTGACAACACTTTGTATGGATCTTCTCTCATTGATCAGGCCCACGTTGACCAGTGGATTGATTTTGCATCGCTGGAGATTGATGCTAAACTTATGACTATGTACCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCAGTTGAGGAAGCTGCAACTTCTGCATTGAAGAGAGCATTTGGGGCTTTGAACACCCACCTTGCCACCAATACTTACCTGGTTGGGCATTCTGTTACCCTTGCTGACATCATAATGACGTGCAATTTGTATTTAGGTTTCACTGTGCTCTTGGTCAAGAGCTTCACCTCTGAGTTTCCTCATGTTGAGAGATACTTTTGGACCCTGGTCAATCAGCCAAACTTCCGAAAGATTTTAGGTCAGGTTAAGCAGACTGAAGCTGTTCCACCTATTCAATCTGCAAAGAAGCCTTCCCAACCTAAGGAATCTAAACCCAAGGCTAAAGAAGAACCAAAGAAAGTGGCTAAACCAGAGCCAGAAAAGCCCAAAGAGGAAGCAGAAGAGGAGGCACCCAAGCCTAAGCCCAAGAATCCTCTTGATCTCCTTCCTCCAAGTAAGATGATACTGGATGAGTGGAAAAGACTCTACTCTAACACTAAGACCAACTTCCGTGAGGTTGCAATCAAAGGATTTTGGGACATGTATGATCCAGAGGGATATTCTCTCTGGTTCTGTGATTACAAATACAATGATGAGAACACCGTTTCCTTTGTGACTTTGAACAAGGTTGGTGGGTTTCTTCAGCGGATGGATCTGGCTCGCAAGTATGCATTTGGAAAGATGCTTGTGATTGGATCAGAGCCTCCATTTAAAGTGAAGGGGTTGTGGCTTTTCCGTGGCCAAGAAATTCCCAAATTTGTGATTGATGAATGCTATGACATGGAGCTCTACGAGTGGACAAAGGTTGACATCTCTGATGAAACCCAGAAGGAGCGTGTCAATCAGATGATTGAAGATTGTGAACCATTTGAGGGAGAGGCTCTTTTGGATGCTAAATGCTTTAAGTGA 1155 0.4416 MGVSNKTPEFLKMNPIGKVPVLQTPDGPIFESNAMARYVARLKGDNTLYGSSLIDQAHVDQWIDFASLEIDAKLMTMYLPRLGFAPYLPPVEEAATSALKRAFGALNTHLATNTYLVGHSVTLADIIMTCNLYLGFTVLLVKSFTSEFPHVERYFWTLVNQPNFRKILGQVKQTEAVPPIQSAKKPSQPKESKPKAKEEPKKVAKPEPEKPKEEAEEEAPKPKPKNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQEIPKFVIDECYDMELYEWTKVDISDETQKERVNQMIEDCEPFEGEALLDAKCFK. 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05302 384 Pfam Elongation factor 1 gamma, conserved domain 223 331 IPR001662 GO:0003746|GO:0006414
Seca6g05302 384 SFLD Main (cytGST) 5 155 - -
Seca6g05302 384 SUPERFAMILY Thioredoxin-like 5 50 IPR036249 -
Seca6g05302 384 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 224 384 IPR001662 GO:0003746|GO:0006414
Seca6g05302 384 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 224 384 IPR036433 GO:0003746|GO:0006414
Seca6g05302 384 SUPERFAMILY GST C-terminal domain-like 38 178 IPR036282 -
Seca6g05302 384 MobiDBLite consensus disorder prediction 176 231 - -
Seca6g05302 384 FunFam Elongation factor 1 gamma 45 181 - -
Seca6g05302 384 CDD GST_C_EF1Bgamma_like 55 175 - -
Seca6g05302 384 MobiDBLite consensus disorder prediction 188 224 - -
Seca6g05302 384 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 52 180 IPR010987 -
Seca6g05302 384 Pfam Glutathione S-transferase, N-terminal domain 5 41 IPR004045 -
Seca6g05302 384 Pfam Glutathione S-transferase, C-terminal domain 93 162 IPR004046 -
Seca6g05302 384 Gene3D - 45 180 - -
Seca6g05302 384 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 1 384 IPR044628 GO:0004364
Seca6g05302 384 SMART EF1G_2 223 331 IPR001662 GO:0003746|GO:0006414
Seca6g05302 384 SFLD Glutathione Transferase (cytosolic) 5 155 IPR040079 -
Seca6g05302 384 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 47 IPR004045 -
Seca6g05302 384 SUPERFAMILY eEF1-gamma domain 224 384 IPR036433 GO:0003746|GO:0006414
Seca6g05302 384 Gene3D Glutaredoxin 1 42 - -
Seca6g05302 384 FunFam Elongation factor 1-gamma 1 224 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05302 Seca-Chr6 119902280 119905675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05302 1 384 Eukaryotic Initiation Factors Gene Family AT1G57720 77.083 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05302 K03233 - gmx:100787125 639.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g05302 6 119902280 119905675 Seca6g05302 6 119902280 119905675 ECH