Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05298 ATGGCGTCTGCTAGCCTTGGAAATGGTGGGGTCGGTAGTTCCAGGTCTGCCTTAAGAGGTTCTTCTAGTTCTGTCGATTGGCTTGGCAGAGAGATGCTTGAGATGAGGTTGAGGGACAAGGTCGACCACGATGAAGACAGAAATTTTCTCTTTCAAACTCAGTTGCCACTGTTTTATACTTTGCAGGATAGTGAGCCTGACATCATTGATGGTGTGGGTGCTGAAACAGGACACGTGATAAGAACCAGCATTGGTGGCCGAAATGGTCAGACTAAGCAGAATGTTAGTTATATTGCGGAGCACGTAGTTGGAACAGGCTCTTTTGGTGTTGTTTTTCAAGCAAAATGTAGAGAAACTGGAGAGATTGTAGCCATCAAGAAGGTTCTCCAGGACAAGCGCTACAAGAATAGAGAGTTACAGATTATGCAAATGCTGGATCATCCAAATATTGTTGCCCTAAGGCATTGTTTCTTTTCAACGACCGACAAAGAAGAACTTTACTTGAATCTTGTACTTGAATATGTTCCTGAAACTGTGAATCGAATTGCACGGAACTATAGCAGGATTAACCAGAGAATGCCTTTAATATATGTAAAGCTTTATACCTACCAGATATGCAGGGCCCTTGCTTATATACATAACTGCATTGGCATCTGTCATCGTGACATCAAACCTCAGAATCTACTTGTGAACCCACACACCCATCAGCTGAAACTATGTGATTTTGGGAGTGCAAAAGTGTTGGTGAAAGGAGAACCCAATGTTTCTTACATCTGTTCAAGATACTATCGAGCCCCCGAACTTATATTTGGTGCCACTGAATATACAACTGCCATAGATATATGGTCAACTGGTTGTGTGATGGCTGAGTTGCTTCTTGGACAGCCCTTGTTCCCTGGAGAGAGTGGAGTTGATCAACTAGTTGAAATCATCAAGGTTTTGGGAACACCAACCAGGGAGGAGATAAAGTGCATGAACCCAAATTATACTGAGTTTAAGTTTCCGCAGATAAAACCTCATCCTTGGCACAAGGTCTTTCAGAAACGTTTACCCCCAGAAGCAGTGGACCTTGTCTGTAGGTTCTTTCAGTACTCTCCTAATTTGAGATGCACTGCTTTGGAAGCTTGCATTCATCCCTTCTTTGATGAATTGAGGGACCCGAACACCCGCCTTCCTAATGGTCGCCCACTTCCTCCACTGTTTAATTTTAAACCTCAGGAACTTTCTGGGATACCCCCTGATGTCATCAATCGGCTTATTCCGGAGCATGCTCGTAAACAGAACTTATTTATGGCTTTGCACACCTAG 1308 0.435 MASASLGNGGVGSSRSALRGSSSSVDWLGREMLEMRLRDKVDHDEDRNFLFQTQLPLFYTLQDSEPDIIDGVGAETGHVIRTSIGGRNGQTKQNVSYIAEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALRHCFFSTTDKEELYLNLVLEYVPETVNRIARNYSRINQRMPLIYVKLYTYQICRALAYIHNCIGICHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNVSYICSRYYRAPELIFGATEYTTAIDIWSTGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACIHPFFDELRDPNTRLPNGRPLPPLFNFKPQELSGIPPDVINRLIPEHARKQNLFMALHT. 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05298 435 FunFam Shaggy-related protein kinase kappa 177 425 - -
Seca6g05298 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Seca6g05298 435 MobiDBLite consensus disorder prediction 1 21 - -
Seca6g05298 435 FunFam Glycogen synthase kinase-3 beta 81 176 - -
Seca6g05298 435 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 66 427 - -
Seca6g05298 435 SMART serkin_6 97 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05298 435 Gene3D Phosphorylase Kinase; domain 1 82 176 - -
Seca6g05298 435 SUPERFAMILY Protein kinase-like (PK-like) 96 408 IPR011009 -
Seca6g05298 435 Pfam Protein kinase domain 99 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05298 435 Gene3D Transferase(Phosphotransferase) domain 1 177 425 - -
Seca6g05298 435 ProSiteProfiles Protein kinase domain profile. 97 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05298 435 CDD STKc_GSK3 92 384 IPR039192 -
Seca6g05298 435 ProSitePatterns Protein kinases ATP-binding region signature. 103 127 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05298 Seca-Chr6 119859025 119867507 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05298 103 389 Core Cell Cycle Gene Families AT1G76540 34.915 3.02e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Seca6g05298 Pkinase 1.7e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05298 K03083 - jre:108983720 812.757