Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05282 ATGGGCTCCATCTCCATCCAACCTCCCCTCACCACCTCCTCTTCCTCTTCCTCTTCTTCTTCCAATTCTTCTTCCTCATCCTCTTCTTCCGCCCCCACTCCTCACCTCATTGACGCCTCCTTAGCCATCGCCACCAGATCTGACCCTCCAACGCTAGATTCCGCCAAAAAGACCCAAATTCAACAGCAATTATCCATCTCCACATCCGCCGCCGCCGCCGCCCCTGTCACCACCGTCAACCCTCCCAAGCGATCCACCAAGGACCGGCACACGAAAGTCGACGGTCGAGGCCGGAGAATTCGAATGCCAGCGACGTGCGCCGCTAGGGTTTTCCAATTGACGAGAGAATTGGGGCACAAGTCAGACGGAGAGACGATCGAGTGGCTCCTCCAACAGGCGGAGCCGGCGATCATCGCAGCCACCGGCACCGGAACAATCCCGGCGAATTTCTCGACACTGAACGTGTCACTCCGGAGCAGCGGTTCGACGCTGTCTGCTCCGCCATCGAAGTCAGCACCTCACACGTTTCATGGAGCACTGGCACTGGCACACCACCCTTACGAAGAAGCGTTTCAGCACACAGCGTTGTTAGGGTTTCATCCTCAACAACACCACCAACAGCAACAACTTATGAGCGCTGATCAAATAGCAGAAGCGCTTCCAAGTGGAGGAGAATCAAGCGAGAATTATATGAGAAAACGGTATAGAGAAGATCTGTTCAAAGATGATGATGGTGAAAAGTATAACAACCAACAAAATGAAAGTGGTGATGCCTCTTCCCCAAAACCATTCAAAACCAACCTACACTTGCAAAAGCAACAACCACCAGATGGTGCTGCTGGTGGTTCTTCTTCTGGCCTTCTTCGTCCTTCCAATTTGCTACCTGCAACTGCCATGTGGGCCGTGGCACCTGCAACCGGTGCGACCGGTGGCAGTGGGAGTACTATCTGGATGCTTCCGGTCACTGCTGGTGCGGCTACTGCTACTTCCGAGAGCCAGACTATGTGGCCTTTTGCTGCTGCTGCTGCGGCGCCTCCTCCTCCTCCTCCTCCTCAAGGTGGTGGTGGGAACGCCACTCCAACTCCGCTGCATTTTATGCCGAGGTTCAACCTTCCAGGTGGTCTTGAATTCCAAGGTGGACGCGGTCTACAATTGGGTTCGATGTACCAACCTTCTCAGCATCTTGGATTAGCCATGTCTGACTCAAATTTGGGTATGTTGGCGGCACTCAATGCTTACACGAGAGGTGGTGGTTTGAATGTGAATTCTGATCACCAAACACATACTTTGGACCATCATCAACATCAACCTACTGAGAGTGGAGAAGATGCTCCTAATACTTCGCAATGA 1350 0.5304 MGSISIQPPLTTSSSSSSSSSNSSSSSSSSAPTPHLIDASLAIATRSDPPTLDSAKKTQIQQQLSISTSAAAAAPVTTVNPPKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSLRSSGSTLSAPPSKSAPHTFHGALALAHHPYEEAFQHTALLGFHPQQHHQQQQLMSADQIAEALPSGGESSENYMRKRYREDLFKDDDGEKYNNQQNESGDASSPKPFKTNLHLQKQQPPDGAAGGSSSGLLRPSNLLPATAMWAVAPATGATGGSGSTIWMLPVTAGAATATSESQTMWPFAAAAAAPPPPPPPQGGGGNATPTPLHFMPRFNLPGGLEFQGGRGLQLGSMYQPSQHLGLAMSDSNLGMLAALNAYTRGGGLNVNSDHQTHTLDHHQHQPTESGEDAPNTSQ. 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05282 449 MobiDBLite consensus disorder prediction 51 82 - -
Seca6g05282 449 ProSiteProfiles TCP domain profile. 86 140 IPR017887 -
Seca6g05282 449 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 13 410 IPR005333 GO:0003700
Seca6g05282 449 MobiDBLite consensus disorder prediction 419 449 - -
Seca6g05282 449 MobiDBLite consensus disorder prediction 239 288 - -
Seca6g05282 449 Pfam TCP family transcription factor 85 237 IPR017887 -
Seca6g05282 449 MobiDBLite consensus disorder prediction 251 288 - -
Seca6g05282 449 MobiDBLite consensus disorder prediction 1 94 - -
Seca6g05282 449 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05282 Seca-Chr6 119724572 119726701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05282 19 443 TCP Transcription Factor Family AT1G58100 39.644 3.45e-65 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca6g05282 TCP 2.9e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05282 - - vra:106776202 488.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g05282 6 119724572 119726701 Seca6g05282 6 119724572 119726701 ECH