Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05280 ATGGAGCTCATGCCTAATGGTTCCATCCATGATTGGCTCCATACGGCTACTAAAACCCCACTGACATGGCCGAAACGCATCGAAATCGCCATGCAGATCGCGCGTGCTCTGCAGTTTCTTCATGAAAGGAAGCCTTTGGTGATCCACAAAGACATAAAGTGA 162 0.4877 MELMPNGSIHDWLHTATKTPLTWPKRIEIAMQIARALQFLHERKPLVIHKDIK. 54
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05280 53 Gene3D Transferase(Phosphotransferase) domain 1 1 53 - -
Seca6g05280 53 ProSiteProfiles Protein kinase domain profile. 1 53 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05280 53 Pfam Protein tyrosine and serine/threonine kinase 1 52 IPR001245 GO:0004672|GO:0006468
Seca6g05280 53 SUPERFAMILY Protein kinase-like (PK-like) 1 53 IPR011009 -
Seca6g05280 53 PANTHER OS01G0253100 PROTEIN 1 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05280 Seca-Chr6 119708124 119708285 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05280 2 53 Receptor kinase-like Gene Family AT2G33580 49.057 2.82e-12 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Seca6g05280 PK_Tyr_Ser-Thr 4e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05280 - - tcc:18607220 87.4261