Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05275 ATGGCCGTGTCACTGTGGAGAGGTCGCGCTGCTTCGTCGGCGTTCAACTTGTTCACCAATGCTCTTCGCCGTTTCTCTTCCGCAGAGGTTACAAAAACCATTCCTCGCGACGCGCGTGAGAGTATGATGTATTCTGACATAAACTCACAGATTGGGAGTTGCATGCCTCTTTCTGCAATGCGAATTGGAACAATCATTCACAACATTGAGTTGAAACCAGGGCAAGGTGGGAAGCTGGTGCGAGCAGCTGGAACAAATGCGAAGATCTTGAAAGAGCCAACGTCCGCATACTGTTTAATCCAACTTCCCTCTGGTGTTAAAAAATTGATTGATTCTCGATGCAGGGCCACCGTTGGCACCGTCTCTAATCCAACCCATGGAGATCGCAAGCTTAGAAAGGCTGGACATAGCCGATGGCTTGGTCGAAGACCGGTTGTTCGAGGAGTGGCTATGAATCCCGTAGATCATCCTCACGGTGGAGGAGAGGGTAAGAGCAAGAGTAGTGGGCGATGGGGGCGAGGATCTCGCACTCCTTGGGGCAAGCCAACTAAGAGTGGCTTCAAGACTGGTCCTCTCAAGCGCAGAAGGTAG 591 0.5144 MAVSLWRGRAASSAFNLFTNALRRFSSAEVTKTIPRDARESMMYSDINSQIGSCMPLSAMRIGTIIHNIELKPGQGGKLVRAAGTNAKILKEPTSAYCLIQLPSGVKKLIDSRCRATVGTVSNPTHGDRKLRKAGHSRWLGRRPVVRGVAMNPVDHPHGGGEGKSKSSGRWGRGSRTPWGKPTKSGFKTGPLKRRR. 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05275 196 MobiDBLite consensus disorder prediction 150 196 - -
Seca6g05275 196 SMART Ribosomal_L2_C_2 49 182 IPR022669 GO:0003735|GO:0005840|GO:0006412
Seca6g05275 196 Gene3D Ribosomal protein L2, domain 3 122 196 IPR014726 -
Seca6g05275 196 SUPERFAMILY Translation proteins SH3-like domain 51 185 IPR008991 -
Seca6g05275 196 ProSitePatterns Ribosomal protein L2 signature. 144 155 IPR022671 GO:0003735|GO:0005840|GO:0006412
Seca6g05275 196 FunFam 50S ribosomal protein L2 122 196 - -
Seca6g05275 196 Pfam Ribosomal Proteins L2, C-terminal domain 50 180 IPR022669 GO:0003735|GO:0005840|GO:0006412
Seca6g05275 196 PANTHER RIBOSOMAL PROTEIN L2 44 195 IPR002171 GO:0003735|GO:0005840|GO:0006412
Seca6g05275 196 FunFam 60S ribosomal protein L2, mitochondrial 45 121 - -
Seca6g05275 196 Gene3D - 45 121 IPR014722 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05275 Seca-Chr6 119666584 119667294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05275 8 161 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 37.037 1.08e-23 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05275 - - gmx:100792418 332.028