Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05272 ATGGCAATACATTCAAAATCTCGTCTTATTGCTTACTCACAAGAGATTGTAGATGGGCAGCCTATTTTTGTTTCTTCAAACTGTCTTCCTATCAAGGCTTTGAAATTTGAACCAGCAGGTCACTCCTTCCATTCTGCTGCCCTTAGACTTCTTGGTGTTCAGGAAGATAACAGAGATGCTGATGATAAAAAAGTGGTTGATGATAAGGAACAGACATATTTCCCATCATCTGATTCTTATAGTAGCAAGAGCAAAAAGAAATCTGGTTCTGGAGACAAGCAGCAAGATCACTATGCGTTATTGGGTCTGAGCCATCTAAGGTATCTTGCTACAGAGGATCAAATACGTAAAAGCTATCGTGAAACTGCCTTGAGGTTTCATCCTGACAAACAGGCTGCTCTTCTTCTTGCTGAGGAAACTGAAGCAGCAAAACAGGCAAAAAAGGATGAAATAGAAAGCCACTTTAAGGCAATCCAGGAAGCATATGAAGTGTTGGTTGATCCCGTGAAGAGAAGAATTTATGATTCTACAGATGAGTTTGATGATGAGATTCCCACTGACTGTGCTCCACAAGACTTTTTCAAGGTGTTTGGCCCTGCTTTTATGAGAAATGGGCGGTGGTCAGTTAATCAACCAATTCCATCACTAGGTGATGATAATACTTCAATAAAAGAAGTTGATAATTTCTATAATTTTTGGTACTCCTTCAAAAGCTGGAGGGAGTTTCCCCATGCTGATGAGTTTGATCTTGAGCAAGCTGAATCTCGAGACCATAGGAGGTGGATGGAAAGACAAAATGCAAAACTGTCAGAAAAAGCTAGGAAGGAAGAGTATGCACGGATACGCACTCTTGTTGATAATGCTTATAAGAGAGACCCAAGAATATTGAGAAGAAAGGAAGAGGAAAAAGCTGAGAAGCAAAGGAAAAAGGAGGCTAAGATCCTGGCAAAGAGGTTGCAGGAAGAGGAAGCAGCCAGAATTGCAGAAGAGGAGAAGCGACGGAAAGAGGAGGAAGAGAGACAAGCTGCAGAGGCTGCTTTACAACAGAAGAAGGTGAAGGAGAAAGAGAAAAAGCTGTTGCGGAAGGAACGAACACGTCTTCGAACTCTTTCTGGACCCATCTTGTCACAGCATTTACTTGAAATTTCTGATGATGACGTAGAAAGCCTTTGCATGTCACTTGATATTGAGCAGCTGAGGGGTTTGTGCGAGAAAATGGAAGGCAGACAGGTGTTAGAGCAAGCAAAGGTTATAAGAGATGCACTGAGTAGTAAGAAAGATGCGGTTGCTGAGAAAGAAGAGACAACTAATCAACAAAATGGTTCCATGAAGGCTAATGGCAGTGCTTCACTAAGCAACACTGAGAAGAAAGAGAAACCTTGGAATAAAGAAGAGATTGATCTATTGAGGAAAGGAATGCAAAAATATCCCAAAGGAACTTCACGAAGATGGGAGGTTATTTCGGAATACATTGGTACTGGAAGATCTGTTGAAGAAATTATGAAGGCAACTAAAACTGTTCTCCTCCAGAAGCCTGATTCAACCAAAGCTTTTGATACTTTTCTTGAGAAAAGGAAACCCGCGGCACAATCAATTGCATCTCCACTGTCAACCAGAGAAGAATTGGAAGGGGTATCAACAACTCCTGGGACTGGGAGGCCTGAAAATAGCGCTGCCTCCTCAACAACAAATAACTTGGAAGACTCTGATAGCAAAACTACAGATAATCAGAACACAACTGCTGCAAATGGAGTTTCCTCTAGTTCAGAACAAGATGTGTGGTCTGCAGTGCAGGAAAGAGCACTGGTTCAAGCTTTAAAAGCCTTTCCAAAGGAAACTAGCCAGAGATGGGAACGAGTTGCAACAGCTGTCCCTGGGAAAACTGTGAATCAGTGCAAGAAGAAGTTTGCAATGATGAAGGAGAATTTCAGGAACAAGAAAAATGCAGTTTAA 1953 0.4173 MAIHSKSRLIAYSQEIVDGQPIFVSSNCLPIKALKFEPAGHSFHSAALRLLGVQEDNRDADDKKVVDDKEQTYFPSSDSYSSKSKKKSGSGDKQQDHYALLGLSHLRYLATEDQIRKSYRETALRFHPDKQAALLLAEETEAAKQAKKDEIESHFKAIQEAYEVLVDPVKRRIYDSTDEFDDEIPTDCAPQDFFKVFGPAFMRNGRWSVNQPIPSLGDDNTSIKEVDNFYNFWYSFKSWREFPHADEFDLEQAESRDHRRWMERQNAKLSEKARKEEYARIRTLVDNAYKRDPRILRRKEEEKAEKQRKKEAKILAKRLQEEEAARIAEEEKRRKEEEERQAAEAALQQKKVKEKEKKLLRKERTRLRTLSGPILSQHLLEISDDDVESLCMSLDIEQLRGLCEKMEGRQVLEQAKVIRDALSSKKDAVAEKEETTNQQNGSMKANGSASLSNTEKKEKPWNKEEIDLLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEIMKATKTVLLQKPDSTKAFDTFLEKRKPAAQSIASPLSTREELEGVSTTPGTGRPENSAASSTTNNLEDSDSKTTDNQNTTAANGVSSSSEQDVWSAVQERALVQALKAFPKETSQRWERVATAVPGKTVNQCKKKFAMMKENFRNKKNAV. 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05272 650 Gene3D - 584 650 - -
Seca6g05272 650 ProSiteProfiles Myb-like domain profile. 453 508 IPR001005 -
Seca6g05272 650 MobiDBLite consensus disorder prediction 59 94 - -
Seca6g05272 650 SMART dnaj_3 95 170 IPR001623 -
Seca6g05272 650 Coils Coil 296 365 - -
Seca6g05272 650 Pfam Myb-like DNA-binding domain 593 638 IPR001005 -
Seca6g05272 650 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 9 649 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Seca6g05272 650 MobiDBLite consensus disorder prediction 434 455 - -
Seca6g05272 650 ProSiteProfiles SANT domain profile. 589 644 IPR017884 -
Seca6g05272 650 SUPERFAMILY Homeodomain-like 592 648 IPR009057 -
Seca6g05272 650 ProSitePatterns Nt-dnaJ domain signature. 155 174 IPR018253 -
Seca6g05272 650 Pfam DnaJ domain 96 175 IPR001623 -
Seca6g05272 650 SMART sant 590 642 IPR001005 -
Seca6g05272 650 SMART sant 457 510 IPR001005 -
Seca6g05272 650 CDD SANT 594 640 IPR001005 -
Seca6g05272 650 MobiDBLite consensus disorder prediction 525 592 - -
Seca6g05272 650 Gene3D DnaJ domain 79 188 IPR036869 -
Seca6g05272 650 ProSiteProfiles Myb-like domain profile. 586 640 IPR001005 -
Seca6g05272 650 MobiDBLite consensus disorder prediction 424 460 - -
Seca6g05272 650 CDD SANT 460 502 IPR001005 -
Seca6g05272 650 CDD DnaJ 96 167 IPR001623 -
Seca6g05272 650 MobiDBLite consensus disorder prediction 531 592 - -
Seca6g05272 650 PRINTS DnaJ domain signature 119 134 IPR001623 -
Seca6g05272 650 PRINTS DnaJ domain signature 150 170 IPR001623 -
Seca6g05272 650 PRINTS DnaJ domain signature 48 66 IPR001623 -
Seca6g05272 650 ProSiteProfiles dnaJ domain profile. 96 178 IPR001623 -
Seca6g05272 650 SUPERFAMILY Chaperone J-domain 94 202 IPR036869 -
Seca6g05272 650 Gene3D - 452 511 - -
Seca6g05272 650 FunFam Myb family transcription factor 588 648 - -
Seca6g05272 650 SUPERFAMILY Homeodomain-like 455 502 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05272 Seca-Chr6 119642696 119647537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05272 97 296 C2H2 Transcription Factor Family AT1G74250 28.870 4.93e-18 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca6g05272 DnaJ 1.6e-17 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05272 K09522 - gmx:100806665 971.074