Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05264 ATGGAGAAGTACGAGCTGGTGAAGGATATAGGATCTGGGAATTTCGGGGTGGCCAGGCTCATGCGCCACAAAGAAACCAAAGAGCTTGTTGCCATGAAATTCATTGAACGAGGTCACAAGATTGATGAGAATGTTGCAAGGGAAATCATAAACCATAGAAGTCTTCGCCACCCGAATATTATTCGGTTCAAGGAGGTGGTTTTGACTCCCACACATCTTGGTATAGTGATGGAGTATGCAGCAGGTGGAGAGCTCTTTGAACGAATTTGCACTGCTGGAAGATTCAGCGAAGATGAGGCTCGATATTTCTTCCAGCAGCTCATCTCAGGAGTTAACTACTGTCACTCCATGCAAATCTGCCATAGAGACTTGAAGCTGGAGAACACATTATTGGATGGCAGCCCTGCCCCACGGCTAAAAATATGTGATTTTGGTTATTCTAAGTCATCTCTGCTTCATTCTAGGCCTAAATCTACGGTGGGAACTCCAGCCTACATTGCACCAGAGGTTCTTTCACGTAGAGAATATGATGGAAAGGTTTACATCTGGCTTGATGAGTTTTCTGTGTTTTATACAACAGTGAAGTTCTCATTTTCTTTGTTCTTCTATTCTGTTTTGTGTTTTGTTCAGTTGGCAGATGTATGGTCCTGTGGAGTGACTCTTTATGTAATGCTGGTGGGAGCATACCCATTTGAGGACCAAGAGGATCCTAAAAATTTCAGGAAAACCATCAATCGAATTATGGCTGTTCAATACAAGATCCCAGACTATGTTCACATAACTCAAGACTGTAGACATCTGCTGTCTCGCATCTTTGTGGCAAATCCAGCCAGGAGAATCACCATTAAGGAAATAAAGTCCCACCCATGGTTTTTAAAGAACTTGCCTAGAGAATTGACAGAAGTGGCTCAAGCTGTCTACTACAGAAAAGAAAACCCAACCTTTTCTCTTCAGAGTATAGAAGATATTATGAATATTGTTGAGGAGGCCAAAAGTCCACCTCCAGCATCCAGGTCAATTGGAGGGTTTGGATGGGGAGGAGAAGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAACAGAAACGAGAGAAGAAGCAGAGGCTGAGGTGGAAGAAGATGAGTATGAAAAGAGAGTCAAGGAGGCACAGGCTAGCGGAGAATTTAATGTCAGTTAA 1173 0.4297 MEKYELVKDIGSGNFGVARLMRHKETKELVAMKFIERGHKIDENVAREIINHRSLRHPNIIRFKEVVLTPTHLGIVMEYAAGGELFERICTAGRFSEDEARYFFQQLISGVNYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKVYIWLDEFSVFYTTVKFSFSLFFYSVLCFVQLADVWSCGVTLYVMLVGAYPFEDQEDPKNFRKTINRIMAVQYKIPDYVHITQDCRHLLSRIFVANPARRITIKEIKSHPWFLKNLPRELTEVAQAVYYRKENPTFSLQSIEDIMNIVEEAKSPPPASRSIGGFGWGGEGEEEEEEEEETETREEAEAEVEEDEYEKRVKEAQASGEFNVS. 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05264 390 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Seca6g05264 390 Coils Coil 348 384 - -
Seca6g05264 390 PANTHER SERINE/THREONINE KINASE 2 350 - -
Seca6g05264 390 MobiDBLite consensus disorder prediction 331 390 - -
Seca6g05264 390 MobiDBLite consensus disorder prediction 347 371 - -
Seca6g05264 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Seca6g05264 390 Pfam Protein kinase domain 4 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05264 390 Pfam Protein kinase domain 212 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05264 390 ProSiteProfiles Protein kinase domain profile. 4 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05264 390 SMART serkin_6 4 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05264 390 FunFam Serine/threonine-protein kinase SRK2E 1 79 - -
Seca6g05264 390 SUPERFAMILY Protein kinase-like (PK-like) 2 311 IPR011009 -
Seca6g05264 390 CDD STKc_SnRK2 3 290 - -
Seca6g05264 390 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Seca6g05264 390 Gene3D Transferase(Phosphotransferase) domain 1 80 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05264 Seca-Chr6 119595194 119599207 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05264 3 294 CBL-interacting serine-threonine protein kinases AT4G24400 39.535 2.19e-62 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Seca6g05264 Pkinase 1.3e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05264 K14498 - gmx:100809324 623.239