Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05261 ATGTGTTGTCTCATTACTACTCAAATGAGGCAACGTCAAGCCAATTCAGCCGAGGGTGTTAAATGCAATGATAAAATTCCCCAGGTCAATTGGTTGCCGCATGCCAATGCTCATGAAAATTTCTCATGCCAAGCCAAGTTTTTGAGCTCAAATTTTCTGTTCTCTGTCCCAACTAAGAAGCCTTCCTATCAAGAACCAATCGCTGGGCCTGGGAGGTTTGTATTCCAACAAAGTCAAAATATTCAGAGTTCACAAAGAGCACAAGTTGACAAGGCTTGGCATGCTCTTTCAAGTCTACAGAATTCTAGTAGGAACTATGTCCAACCTGGAAAAACTGTTAAGGTTACTCCTCAGCTTCATGAAGAAAGAACAGCAACTTCCCTCCAAGGAAGCTATGAAAACAACAAACTTAGCCATCCTGATGTCGCCACTACTCCAGCTGTCATTAATCATAGTTCTCGGTTTTTGGATAGTTCAATGAACAATCATGCCAAGTACACAGGCCAAATCAATGAGTCTAGAGAATGCATAGCTGATGATATTGATGACATACTTGAGAACATAGATGTTGACCAAATTGTGGAGAAATACCAGTCTTCTTGCACTCCCCAGCCATCAGTATCCAAGCTTCCTCCTATTACACCAACTGCAGATAAAGATAATTTTGCTAGACAGGGGGATAATTTTTTGCCACCAGAACTGTGCATAGTTTGCATTCACAATTACAAGTTAGGGCTTTGCCCTGAAGCAGCAAGTCATTTGCAAGAATTGAAGGATAATCTAATTTCTATCTCTAATCAACTGCTTGACAATGTTGAAAACCTCAGTTCTACAGAGATATCAAAGCTTCGTCAAGATAGGTCACAGTTGAATAAACAAATTCAGCAGCTTGAAACATATATTCATTCCAGAAATCTTGATGAGGAAAGACAAAAGTCACATTTTTCTGCATCTACAGCACCTCCTACATCTTTTGTCTATGAAACACCTCAGCAAACTTTCCTCCATAGTGGACTAAAGGGATATGATGCCCAGACTTATATGGACAATGGGAGATGTGGATCGTCATTCCAGTCTGTTTCATTCTTTTCTGTAGATAAGTATGGCATGCCATCAGGTCCAGTGGAGAGGGAAGCATTCATCCCAAAGATTATTGAAGTTAATTACATTGAAGGTTCTGGGGACAAAAGGTGGAGCAGCCAGGATTTTCCTTGGACAAGAGAATTGGAGGTTAATAATAAAAAAGTATTTGGAAATCACTCATTTCGCCCCAACCAAAGAGAGGTCATTAATGCCACAATGAGTGGATGTGATGTTTTTGTTTTGATGCCCACTGGTGGAGGGAAGAGTCTAACCTATCAGCTACCAGCTCTTATTTGTCCTGGCATAACATTAGTAATTTCTCCCCTTGTGTCCCTTATTCAAGATCAAATAATGCACCTGTTGCAGGCAAATATACCTGCTACCTACTTAAGTGCCAATATGGAATGGGCTGAACAGCAGGAGATCCTTAGAGAACTTAATTCTGATTATTGTAAATACAAGTTGTTATATGTGACACCCGAGAAGGTTGCCAGAAGTGATGTTCTTCTGCGACACTTGGAGAACTTACATGTTCGTGAGTTGCTTTCGAGGATTGTAATTGATGAGGCTCATTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGACTATCAGGGACTTGGTATATTGAAACACAAATTCCCAAATACTCCTGTTTTAGCTTTAACAGCTACAGCAACAGCTAGTGTAAAAGAGGATGTTGTGCAAGCACTTAGTCTCGTTAACTGCATTGTTTTCCGACAAAGCTTTAATCGCCCAAACTTATGGTATTCTGTTGTCCCTAAGACCAAAAAGTGTGTGGAGGACATTGACAAATTCATAAGGGAAAACCATTTTGATGAATGTGGCATTATCTATTGTCTTTCACGAATGGACTGTGAAAAGGTTGCTGAAAAATTACAGGAATGTGGACATAAATGTGCATTTTATCATGGGAGCATGGATCCTGCTCAACGTGCTTTTGTTCAAAAGCAATGGAGCAAAGATGAGATCAATATAATATGTGCTACTGTGGCATTTGGAATGGGTATTAACAAACCTGATGTCCGCTTTGTAATCCATCATTCGCTCCCAAAATCTATTGAAGGCTATCATCAGGAATGTGGACGAGCTGGTAGAGATGGTCAACGTTCATCATGTGTATTATATTATAGCTACAGTGATTATATACGAGTTAAGCATATGCTGAGTCAAGGAGCAATAGAGCAAAGCCCCATGACATCTGGATACAACCGATTAAATATGACAAATTCAGGAAGGATACTGGAAACAAACACTGAAAACCTTTTGCGAATGGTTAGTTATTGTGAAAATGATGTTGATTGTCGGCGCCTTCTTCAGCTTGCTCATTTTGGGGAGAAGTTTGATTCTTTTACCTGTCACAAAACATGTGATAATTGCTTGAAGGTCACAAGTTTCATTGAAAAGGATGTCACAGAGATTGCAAAACAATTGGTTTGA 2544 0.3986 MCCLITTQMRQRQANSAEGVKCNDKIPQVNWLPHANAHENFSCQAKFLSSNFLFSVPTKKPSYQEPIAGPGRFVFQQSQNIQSSQRAQVDKAWHALSSLQNSSRNYVQPGKTVKVTPQLHEERTATSLQGSYENNKLSHPDVATTPAVINHSSRFLDSSMNNHAKYTGQINESRECIADDIDDILENIDVDQIVEKYQSSCTPQPSVSKLPPITPTADKDNFARQGDNFLPPELCIVCIHNYKLGLCPEAASHLQELKDNLISISNQLLDNVENLSSTEISKLRQDRSQLNKQIQQLETYIHSRNLDEERQKSHFSASTAPPTSFVYETPQQTFLHSGLKGYDAQTYMDNGRCGSSFQSVSFFSVDKYGMPSGPVEREAFIPKIIEVNYIEGSGDKRWSSQDFPWTRELEVNNKKVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATYLSANMEWAEQQEILRELNSDYCKYKLLYVTPEKVARSDVLLRHLENLHVRELLSRIVIDEAHCVSQWGHDFRPDYQGLGILKHKFPNTPVLALTATATASVKEDVVQALSLVNCIVFRQSFNRPNLWYSVVPKTKKCVEDIDKFIRENHFDECGIIYCLSRMDCEKVAEKLQECGHKCAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMLSQGAIEQSPMTSGYNRLNMTNSGRILETNTENLLRMVSYCENDVDCRRLLQLAHFGEKFDSFTCHKTCDNCLKVTSFIEKDVTEIAKQLV. 848
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05261 847 FunFam ATP-dependent DNA helicase RecQ 395 612 - -
Seca6g05261 847 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 630 775 IPR001650 -
Seca6g05261 847 SMART helicmild6 655 736 IPR001650 -
Seca6g05261 847 CDD SF2_C_RecQ 613 745 - -
Seca6g05261 847 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 544 553 IPR002464 -
Seca6g05261 847 SMART ultradead3 418 621 IPR014001 -
Seca6g05261 847 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 430 605 IPR014001 -
Seca6g05261 847 NCBIfam RecQ family ATP-dependent DNA helicase 414 845 IPR004589 GO:0004386|GO:0006310
Seca6g05261 847 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 462 756 IPR027417 -
Seca6g05261 847 PANTHER DNA HELICASE RECQ FAMILY MEMBER 392 836 - -
Seca6g05261 847 ProSiteProfiles Rhodanese domain profile. 645 687 IPR001763 -
Seca6g05261 847 Coils Coil 280 300 - -
Seca6g05261 847 Gene3D - 386 612 IPR027417 -
Seca6g05261 847 Gene3D - 613 832 IPR027417 -
Seca6g05261 847 Pfam DEAD/DEAH box helicase 424 592 IPR011545 GO:0003676|GO:0005524
Seca6g05261 847 FunFam Bloom syndrome, RecQ helicase 613 833 - -
Seca6g05261 847 CDD DEXHc_RecQ 413 612 - -
Seca6g05261 847 Pfam RecQ zinc-binding 747 829 IPR032284 -
Seca6g05261 847 Pfam Helicase conserved C-terminal domain 630 735 IPR001650 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca6g05261 Seca-Chr6 119519415 119528839 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05261 644 767 Eukaryotic Initiation Factors Gene Family AT3G19760 24.409 9.00e-08 53.5
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05261 K10901 - gmx:100800006 1380.16