Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca6g05261 | ATGTGTTGTCTCATTACTACTCAAATGAGGCAACGTCAAGCCAATTCAGCCGAGGGTGTTAAATGCAATGATAAAATTCCCCAGGTCAATTGGTTGCCGCATGCCAATGCTCATGAAAATTTCTCATGCCAAGCCAAGTTTTTGAGCTCAAATTTTCTGTTCTCTGTCCCAACTAAGAAGCCTTCCTATCAAGAACCAATCGCTGGGCCTGGGAGGTTTGTATTCCAACAAAGTCAAAATATTCAGAGTTCACAAAGAGCACAAGTTGACAAGGCTTGGCATGCTCTTTCAAGTCTACAGAATTCTAGTAGGAACTATGTCCAACCTGGAAAAACTGTTAAGGTTACTCCTCAGCTTCATGAAGAAAGAACAGCAACTTCCCTCCAAGGAAGCTATGAAAACAACAAACTTAGCCATCCTGATGTCGCCACTACTCCAGCTGTCATTAATCATAGTTCTCGGTTTTTGGATAGTTCAATGAACAATCATGCCAAGTACACAGGCCAAATCAATGAGTCTAGAGAATGCATAGCTGATGATATTGATGACATACTTGAGAACATAGATGTTGACCAAATTGTGGAGAAATACCAGTCTTCTTGCACTCCCCAGCCATCAGTATCCAAGCTTCCTCCTATTACACCAACTGCAGATAAAGATAATTTTGCTAGACAGGGGGATAATTTTTTGCCACCAGAACTGTGCATAGTTTGCATTCACAATTACAAGTTAGGGCTTTGCCCTGAAGCAGCAAGTCATTTGCAAGAATTGAAGGATAATCTAATTTCTATCTCTAATCAACTGCTTGACAATGTTGAAAACCTCAGTTCTACAGAGATATCAAAGCTTCGTCAAGATAGGTCACAGTTGAATAAACAAATTCAGCAGCTTGAAACATATATTCATTCCAGAAATCTTGATGAGGAAAGACAAAAGTCACATTTTTCTGCATCTACAGCACCTCCTACATCTTTTGTCTATGAAACACCTCAGCAAACTTTCCTCCATAGTGGACTAAAGGGATATGATGCCCAGACTTATATGGACAATGGGAGATGTGGATCGTCATTCCAGTCTGTTTCATTCTTTTCTGTAGATAAGTATGGCATGCCATCAGGTCCAGTGGAGAGGGAAGCATTCATCCCAAAGATTATTGAAGTTAATTACATTGAAGGTTCTGGGGACAAAAGGTGGAGCAGCCAGGATTTTCCTTGGACAAGAGAATTGGAGGTTAATAATAAAAAAGTATTTGGAAATCACTCATTTCGCCCCAACCAAAGAGAGGTCATTAATGCCACAATGAGTGGATGTGATGTTTTTGTTTTGATGCCCACTGGTGGAGGGAAGAGTCTAACCTATCAGCTACCAGCTCTTATTTGTCCTGGCATAACATTAGTAATTTCTCCCCTTGTGTCCCTTATTCAAGATCAAATAATGCACCTGTTGCAGGCAAATATACCTGCTACCTACTTAAGTGCCAATATGGAATGGGCTGAACAGCAGGAGATCCTTAGAGAACTTAATTCTGATTATTGTAAATACAAGTTGTTATATGTGACACCCGAGAAGGTTGCCAGAAGTGATGTTCTTCTGCGACACTTGGAGAACTTACATGTTCGTGAGTTGCTTTCGAGGATTGTAATTGATGAGGCTCATTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGACTATCAGGGACTTGGTATATTGAAACACAAATTCCCAAATACTCCTGTTTTAGCTTTAACAGCTACAGCAACAGCTAGTGTAAAAGAGGATGTTGTGCAAGCACTTAGTCTCGTTAACTGCATTGTTTTCCGACAAAGCTTTAATCGCCCAAACTTATGGTATTCTGTTGTCCCTAAGACCAAAAAGTGTGTGGAGGACATTGACAAATTCATAAGGGAAAACCATTTTGATGAATGTGGCATTATCTATTGTCTTTCACGAATGGACTGTGAAAAGGTTGCTGAAAAATTACAGGAATGTGGACATAAATGTGCATTTTATCATGGGAGCATGGATCCTGCTCAACGTGCTTTTGTTCAAAAGCAATGGAGCAAAGATGAGATCAATATAATATGTGCTACTGTGGCATTTGGAATGGGTATTAACAAACCTGATGTCCGCTTTGTAATCCATCATTCGCTCCCAAAATCTATTGAAGGCTATCATCAGGAATGTGGACGAGCTGGTAGAGATGGTCAACGTTCATCATGTGTATTATATTATAGCTACAGTGATTATATACGAGTTAAGCATATGCTGAGTCAAGGAGCAATAGAGCAAAGCCCCATGACATCTGGATACAACCGATTAAATATGACAAATTCAGGAAGGATACTGGAAACAAACACTGAAAACCTTTTGCGAATGGTTAGTTATTGTGAAAATGATGTTGATTGTCGGCGCCTTCTTCAGCTTGCTCATTTTGGGGAGAAGTTTGATTCTTTTACCTGTCACAAAACATGTGATAATTGCTTGAAGGTCACAAGTTTCATTGAAAAGGATGTCACAGAGATTGCAAAACAATTGGTTTGA | 2544 | 0.3986 | MCCLITTQMRQRQANSAEGVKCNDKIPQVNWLPHANAHENFSCQAKFLSSNFLFSVPTKKPSYQEPIAGPGRFVFQQSQNIQSSQRAQVDKAWHALSSLQNSSRNYVQPGKTVKVTPQLHEERTATSLQGSYENNKLSHPDVATTPAVINHSSRFLDSSMNNHAKYTGQINESRECIADDIDDILENIDVDQIVEKYQSSCTPQPSVSKLPPITPTADKDNFARQGDNFLPPELCIVCIHNYKLGLCPEAASHLQELKDNLISISNQLLDNVENLSSTEISKLRQDRSQLNKQIQQLETYIHSRNLDEERQKSHFSASTAPPTSFVYETPQQTFLHSGLKGYDAQTYMDNGRCGSSFQSVSFFSVDKYGMPSGPVEREAFIPKIIEVNYIEGSGDKRWSSQDFPWTRELEVNNKKVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATYLSANMEWAEQQEILRELNSDYCKYKLLYVTPEKVARSDVLLRHLENLHVRELLSRIVIDEAHCVSQWGHDFRPDYQGLGILKHKFPNTPVLALTATATASVKEDVVQALSLVNCIVFRQSFNRPNLWYSVVPKTKKCVEDIDKFIRENHFDECGIIYCLSRMDCEKVAEKLQECGHKCAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMLSQGAIEQSPMTSGYNRLNMTNSGRILETNTENLLRMVSYCENDVDCRRLLQLAHFGEKFDSFTCHKTCDNCLKVTSFIEKDVTEIAKQLV. | 848 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca6g05261 | 847 | FunFam | ATP-dependent DNA helicase RecQ | 395 | 612 | - | - | |
Seca6g05261 | 847 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 630 | 775 | IPR001650 | - | |
Seca6g05261 | 847 | SMART | helicmild6 | 655 | 736 | IPR001650 | - | |
Seca6g05261 | 847 | CDD | SF2_C_RecQ | 613 | 745 | - | - | |
Seca6g05261 | 847 | ProSitePatterns | DEAH-box subfamily ATP-dependent helicases signature. | 544 | 553 | IPR002464 | - | |
Seca6g05261 | 847 | SMART | ultradead3 | 418 | 621 | IPR014001 | - | |
Seca6g05261 | 847 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 430 | 605 | IPR014001 | - | |
Seca6g05261 | 847 | NCBIfam | RecQ family ATP-dependent DNA helicase | 414 | 845 | IPR004589 | GO:0004386|GO:0006310 | |
Seca6g05261 | 847 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 462 | 756 | IPR027417 | - | |
Seca6g05261 | 847 | PANTHER | DNA HELICASE RECQ FAMILY MEMBER | 392 | 836 | - | - | |
Seca6g05261 | 847 | ProSiteProfiles | Rhodanese domain profile. | 645 | 687 | IPR001763 | - | |
Seca6g05261 | 847 | Coils | Coil | 280 | 300 | - | - | |
Seca6g05261 | 847 | Gene3D | - | 386 | 612 | IPR027417 | - | |
Seca6g05261 | 847 | Gene3D | - | 613 | 832 | IPR027417 | - | |
Seca6g05261 | 847 | Pfam | DEAD/DEAH box helicase | 424 | 592 | IPR011545 | GO:0003676|GO:0005524 | |
Seca6g05261 | 847 | FunFam | Bloom syndrome, RecQ helicase | 613 | 833 | - | - | |
Seca6g05261 | 847 | CDD | DEXHc_RecQ | 413 | 612 | - | - | |
Seca6g05261 | 847 | Pfam | RecQ zinc-binding | 747 | 829 | IPR032284 | - | |
Seca6g05261 | 847 | Pfam | Helicase conserved C-terminal domain | 630 | 735 | IPR001650 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca6g05261 | Seca-Chr6 | 119519415 | 119528839 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca6g05261 | 644 | 767 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 24.409 | 9.00e-08 | 53.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca6g05261 | K10901 | - | gmx:100800006 | 1380.16 |