Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05252 ATGTATGTTTCCTCTCTTCCTGGCACCGGAGGAGGATTCATACCGGGGGGACGCCGCCGTTACCACCGCCGTGGAGCAGCAGTGCTGGCAAGTGATCCAGAAAGATTCTGCACAAATTATTATTGCAGGACAAGAAAAACTCCATTGTGGCGCAAGGGACCTCTGGGAACAAAGACTTTGTGCAATGCATGTGGCATTTATTACGTTAAGCATGTGAAGAGCAGGGGGAGTCGCATCCCTCAAGTGCCAATTGAAGAAGGTGATGCTTCTTCCTCCAGTGTAGTCCCTGATGGTGCAGGTGCTCCTCCAAGTTCTGTTCCAGCTGCAACTGATCCAAAAGGGTCTTCAGATTTCTAA 357 0.5014 MYVSSLPGTGGGFIPGGRRRYHRRGAAVLASDPERFCTNYYCRTRKTPLWRKGPLGTKTLCNACGIYYVKHVKSRGSRIPQVPIEEGDASSSSVVPDGAGAPPSSVPAATDPKGSSDF. 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05252 118 CDD ZnF_GATA 36 71 IPR000679 GO:0006355|GO:0043565
Seca6g05252 118 Gene3D - 30 87 IPR013088 GO:0006355|GO:0008270
Seca6g05252 118 MobiDBLite consensus disorder prediction 78 118 - -
Seca6g05252 118 ProSiteProfiles GATA-type zinc finger domain profile. 42 75 IPR000679 GO:0006355|GO:0043565
Seca6g05252 118 Pfam GATA zinc finger 42 71 IPR000679 GO:0006355|GO:0043565
Seca6g05252 118 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 30 81 - -
Seca6g05252 118 SMART GATA_3 31 84 IPR000679 GO:0006355|GO:0043565
Seca6g05252 118 PANTHER OS01G0976800 PROTEIN 35 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05252 Seca-Chr6 119408924 119409526 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05252 37 86 C2C2-Gata Transcription Factor Family AT3G20750 44.000 3.69e-11 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca6g05252 GATA 2e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05252 - - gmx:102663335 106.686