Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05251 ATGAGGAGCTCTGCAGCCCCATCCCCTTCACCCTCCACACCCACATGCCCCATGGACCTCAATTATGTGCTAAGAATCCCATGGAATTCTTCTGCTTGTGAAAATTTCCACTCTTTGGCATCCAAAAAAGAGGCAAACACAACCACTTGTTGCATAACACTTCTGTCCCTCTTTGGCATAGGACTTGCACAGCACCTGAAAGAGACCTCTGGTTTTCAGCTCCCAAACCTTCCCACCTCTATTTCATGCCTTGAAGACTTCCAATCCAAGCTCACTTCCCTCTCACTCCCCAACAATATCGTCAACTCCTGCTTTGACCCTCTTCAGTTTGTTATCTCTCCCAATATATGTGCAGGAATTGAAACTATCCCAGATTGGACCAACAAGCTTGGTCAGAGCACACCACTCAACACTGCATGTAGAGCAGATCTCACTGATCTTTCCCTCTGTGATGTGTGCCTGGCGGCGGGGTTACAGGTGAAACAGAAACTTGTTTCCATTGATGGTAATGCTTCTCATTCCTTGGATTGCTTTTACTTCGCCATTCTTTATGCTGCTGGAATTGTGAATGAGTTTGGACCTGAAAGCAATGGTGCTGTCACTTGCATCTTTAGTCTACCGGTTCATTCACAAGTGGGTTCTGGGTCAAAGGGTCACCAGGCTCTTGTGTTTGGGTTAACAGGAGCTGGAGTTGCATTACTTGTCATGTCTTCTTTGTTGGCACTGTATGTCTGGTATGACAGGAAGCGTAAGAAGTTTGATTTTGACCCTGAGGAACAAGGGTCTAGGCGTAGATTGAGACCCAATACAGGGTCGATTTGGTTCAAAATTGGGGAACTTGAGAAGGCTACTGATAATTTTTCACCTAAGAACTTCATAGGGCGAGGTGGGTTTGGGTTGGTTTTTAAGGGAACCTTGCCTGATGGGACAGTGGTTGCTGTGAAAAGGATTTTGGAATCTGATTTTCAAGGGGATGTTGAGTTTTGTAATGAGGTGGAGATTATTAGCAATCTGAAGCACCGTAATCTGGTGCCACTCAGAGGCTGTTGTGTGGAAGATGAGAGTGAGAATTATCATGACAAGGGAAGCCAGAGATATCTTGTTTATGATTACATGCCAAATGGCAACCTTGAAGACCATCTCTTTATACCATCATCAGACCCTGAAAAGGCAAAGAAATCATTGACCTGGCCTCAAAGAAAAAGCATAATCTTGGATGTTGCAAAGGGGTTGGCTTATTTGCATTATGGAGTTAAACCTGCAATTTATCACAGGGATATCAAAGCCACCAATATACTACTTGATGCAGATATGAGGGCAAGAGTTGCAGATTTTGGGCTTGCTAAACAAAGCAGGGAGGGTCAGTCTCATCTCACTACCAGAGTAGCTGGAACTCATGGATATCTAGCCCCAGAATATGCACTCTATGGTCAACTGACTGAGAAGAGTGATGTCTATAGCTTTGGTGTGGTTGTTTTGGAGATAATGTGTGGGAGGAAGGCTCTTGACTTGTCTTCATCAGGATCTCCAAGGGCATTCTTGATCACAGATTGGGCTTGGTCATTGGTGAAATCTGGGAAAATAGAAGAGGCTCTGGATGCTTCCCTTTTGAAAGATGAAAACTGTCCTAGTTCAAATCCTAAGAGCATAATGGAAAGGTTTTTGCTGGTAGGAATTTTATGCTCTCATGTAATGGTTGCTCTGAGGCCAACAATTGCTGATGCATTGAAGATGTTGGAAGGTGATATTGAGGTTCCCCAAATTCCAGATAGGCCTATGCCTCTTGGGCATCCTTCATTTTATAATAATACCGATGGGAACACTTTTAGCATATCCCCAGCATTAAGTGGCCCCAAATTGCAAACTGGAGACATGCTCAGGTAA 1884 0.4421 MRSSAAPSPSPSTPTCPMDLNYVLRIPWNSSACENFHSLASKKEANTTTCCITLLSLFGIGLAQHLKETSGFQLPNLPTSISCLEDFQSKLTSLSLPNNIVNSCFDPLQFVISPNICAGIETIPDWTNKLGQSTPLNTACRADLTDLSLCDVCLAAGLQVKQKLVSIDGNASHSLDCFYFAILYAAGIVNEFGPESNGAVTCIFSLPVHSQVGSGSKGHQALVFGLTGAGVALLVMSSLLALYVWYDRKRKKFDFDPEEQGSRRRLRPNTGSIWFKIGELEKATDNFSPKNFIGRGGFGLVFKGTLPDGTVVAVKRILESDFQGDVEFCNEVEIISNLKHRNLVPLRGCCVEDESENYHDKGSQRYLVYDYMPNGNLEDHLFIPSSDPEKAKKSLTWPQRKSIILDVAKGLAYLHYGVKPAIYHRDIKATNILLDADMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDLSSSGSPRAFLITDWAWSLVKSGKIEEALDASLLKDENCPSSNPKSIMERFLLVGILCSHVMVALRPTIADALKMLEGDIEVPQIPDRPMPLGHPSFYNNTDGNTFSISPALSGPKLQTGDMLR. 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05251 627 Pfam Protein kinase domain 290 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05251 627 SMART serkin_6 287 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05251 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 422 434 IPR008271 GO:0004672|GO:0006468
Seca6g05251 627 FunFam probable receptor-like protein kinase At1g11050 248 371 - -
Seca6g05251 627 Gene3D Transferase(Phosphotransferase) domain 1 372 587 - -
Seca6g05251 627 CDD STKc_IRAK 293 581 - -
Seca6g05251 627 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 372 587 - -
Seca6g05251 627 Pfam SPARK 12 178 IPR043891 -
Seca6g05251 627 ProSiteProfiles Protein kinase domain profile. 287 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05251 627 ProSitePatterns Protein kinases ATP-binding region signature. 293 315 IPR017441 GO:0005524
Seca6g05251 627 Gene3D Phosphorylase Kinase; domain 1 256 371 - -
Seca6g05251 627 SUPERFAMILY Protein kinase-like (PK-like) 267 580 IPR011009 -
Seca6g05251 627 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 118 599 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05251 Seca-Chr6 119391404 119393308 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05251 6 627 Receptor kinase-like Gene Family AT1G11050 66.292 0.0 821
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Seca6g05251 Pkinase 6.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05251 - - gmx:100806560 1087.02