Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05246 ATGGGAAGAAGAAACTCATCACTGCAACAAAAACTTCGTCGTCGAGTGGAGGCCGTGTGCCCTACCGCCGACGAAATTGTCAATCATCTTCGGTTAACCTACTCTGATTACCAGCGAACCAAGCAGCAAACTCTGAAACGATTTGTTCAAGAAGCTCTTCAATCCACACGGAACCATGGCGATGAGGATGAGGATCGAAATTCCTCTCGAAAGAGACGGAAGGAAATTGACGAAGGTGATAAAGAGAGATTGCAAAATATGGAAGCGAGTATGCAAGTCCCATCGACCCCATCTTATTCAACTTCGGAGAGTGGCGAAGAAGACGGAACTGCGTCGGTGTCGTCAGTGGAACCTTGTCTTGACTTGATGAAGACAATGCTGCGGAATTCGTATACTGCAACTAAGGTTGTGGTGGAGGGAAAGAATGTTGAAATGGAGGTGAGCAATAGTGGTAAGGTCATTAACACTGTTAATGAAGGTGAAGCCAGGTCGGCGGGGAGGCAATTGAAGGGTTCTATCTCAAACGGCGGTGGTGATGATGATGTTGAGGTGAAGGGGAAGGAGAAGGGGAATGATGGGCCAAGGTTTAGGGATTTGGGTGGGATGAAAGAGGTTTTGGAGGAAGTGAAGAGGGAGGTGATTCTGCCGTTCTATCATCCCCACGTGCCTAAAGATTTAAAACCCTCTGGCATTTTGTTGCATGGACCTTCTGGCTGTGGGAAGACTATACTGGCTCGTGCTATTGCTAATGAGACTGGTCTTCCTTTCTATCAAATGGAGTCAGGTGCATTGGAAGAAAATATTAGACAGATTTTCTATAAAGCATATAGGACCACCCCATCAATTGTCTTTATTGATGAGATTGATGCAGTTGCTTCAAAAAGAGAGAATTTACAGAGGGATCGAATTGTTACTAAGTTAATTACTTGCATGGATCAACCACCTGATGATTTAGAGGGTCCTTCTGGCTCCATTCTTGTAATTGGAGCTACAAGTAGGCCAGATGCTATTGACCCTGCCCTTAGAAGGCGGTTTGATCGTGAGATTATTATTGGCATTCCTGATGAATCTGCTAGGGAAGATATCCTTTCCATGCTTATTACTCGCAATAATCTTAAACTCGAGGGTCCGATTGATCTACAAAAGATAGCCAGGGCTACACCAGGATTTGTTGGTGCTGATTTGGTAGCTCTGACTAAGCAGGCTAGTAATCTGGCAATGAATAAAATAGTTGATGAAAGGTATGTCACGAGTGAGCCTCCTGAAGATTGGTGTATAGAACCTTGGTTGACAGAAGAAGTGGATAAGCAGGCCATCAAAATGTCTGATTTTGAGGAAGCAGTCAAAAGGGTGCAACCATCAACCAAAAGAGAAGGGTTCTCTCCCATTCCTAATGTAAAATGGGAAGATGTTGGTGGGCTTGATCACTTAAGACAGGAGTTTGAAGACTATATTATAAGGCGTATAAAATATCCTGAGGATTATGAGAGATTTGGGTTGAAATCAGAGGCAGGAATTTTGCTTTATGGACCTCCAGGTTGTGGTAAAACACTGATTGCCAAAGCTGTTGCCAATGCGGCAGGAGCTAATTTCAGACATATTAAGGGACCTGAACTTCTAAATAAATATGTTGGAGAAAGTGAGCTGGAAGTTCGGAAATTGTTTAGCCATGCAAGGACGTGTGCACCTTGTATACTTTTTTTTTATGAGGTGGATGCTTTGGCAACCAAACGTGGTAAAGAAGGTGGATGGGTTACTGAACGACTATTGAACCAGTTGCTTATCGAGTTAGATGGCGCAGAGCAGCGAAGAGGTGTTTTTGTGATTGGTGCAACAAATAGGTACGTTTCGCCTGAGGTGATGGATCCTGCTCTTTTACGGCCTGGTAGGTTAGGAAAACTTCTTTACGTTCCTCTCCCAAGCCCAGACGAGCGAGTTTTAATATTGAAAGCTCTTACAAGGACGATACCTGTTGATGCCAGTGTGGATTTGAACGTCATAGGAACATCCGAAGCTTGTGACAACCTGAGTGGCGCTGATCTTGCTGCATTGATGAATGAAGCAGCACTGGCTGCTATTAGAGAGAGGAGGGCCTCAACTGATACAACTCGTGATACATTGAACACAGTCAAGACACATCATATTCACGAAGCACTGAGTAAAGTCTTTCCCTCTGTGTCAGACATGCAAAAGCAGTACTACCAGCATTTGTCAGAGAGGTTTAACCCTGCTTTCCGCAGGAGTGTAAAAGAAAGAAGCGAGAAAGAAACGGGGGGAAATCAATCGTTTGGGAGAGAGTGGAAGAGGGGGAGAAAGGAGAAAAAGCGGTGTGGGACCGAGCAACAAATTTTCTCATCACCGGAAGCGAGGAAAAGGAGACTGGGAAGAAGACAACAATGA 2400 0.445 MGRRNSSLQQKLRRRVEAVCPTADEIVNHLRLTYSDYQRTKQQTLKRFVQEALQSTRNHGDEDEDRNSSRKRRKEIDEGDKERLQNMEASMQVPSTPSYSTSESGEEDGTASVSSVEPCLDLMKTMLRNSYTATKVVVEGKNVEMEVSNSGKVINTVNEGEARSAGRQLKGSISNGGGDDDVEVKGKEKGNDGPRFRDLGGMKEVLEEVKREVILPFYHPHVPKDLKPSGILLHGPSGCGKTILARAIANETGLPFYQMESGALEENIRQIFYKAYRTTPSIVFIDEIDAVASKRENLQRDRIVTKLITCMDQPPDDLEGPSGSILVIGATSRPDAIDPALRRRFDREIIIGIPDESAREDILSMLITRNNLKLEGPIDLQKIARATPGFVGADLVALTKQASNLAMNKIVDERYVTSEPPEDWCIEPWLTEEVDKQAIKMSDFEEAVKRVQPSTKREGFSPIPNVKWEDVGGLDHLRQEFEDYIIRRIKYPEDYERFGLKSEAGILLYGPPGCGKTLIAKAVANAAGANFRHIKGPELLNKYVGESELEVRKLFSHARTCAPCILFFYEVDALATKRGKEGGWVTERLLNQLLIELDGAEQRRGVFVIGATNRYVSPEVMDPALLRPGRLGKLLYVPLPSPDERVLILKALTRTIPVDASVDLNVIGTSEACDNLSGADLAALMNEAALAAIRERRASTDTTRDTLNTVKTHHIHEALSKVFPSVSDMQKQYYQHLSERFNPAFRRSVKERSEKETGGNQSFGREWKRGRKEKKRCGTEQQIFSSPEARKRRLGRRQQ. 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05246 799 ProSitePatterns AAA-protein family signature. 325 344 IPR003960 GO:0005524|GO:0016887
Seca6g05246 799 MobiDBLite consensus disorder prediction 88 111 - -
Seca6g05246 799 MobiDBLite consensus disorder prediction 54 115 - -
Seca6g05246 799 PANTHER AAA-FAMILY ATPASE 79 742 - -
Seca6g05246 799 MobiDBLite consensus disorder prediction 180 195 - -
Seca6g05246 799 Gene3D - 354 451 - -
Seca6g05246 799 Gene3D - 195 455 IPR027417 -
Seca6g05246 799 MobiDBLite consensus disorder prediction 749 799 - -
Seca6g05246 799 MobiDBLite consensus disorder prediction 749 779 - -
Seca6g05246 799 MobiDBLite consensus disorder prediction 56 85 - -
Seca6g05246 799 Gene3D - 640 720 - -
Seca6g05246 799 MobiDBLite consensus disorder prediction 161 195 - -
Seca6g05246 799 Pfam ATPase family associated with various cellular activities (AAA) 506 638 IPR003959 GO:0005524|GO:0016887
Seca6g05246 799 Pfam ATPase family associated with various cellular activities (AAA) 231 351 IPR003959 GO:0005524|GO:0016887
Seca6g05246 799 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 458 IPR027417 -
Seca6g05246 799 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 464 739 IPR027417 -
Seca6g05246 799 Pfam AAA+ lid domain 662 704 IPR041569 -
Seca6g05246 799 Pfam AAA+ lid domain 378 418 IPR041569 -
Seca6g05246 799 Gene3D - 464 734 IPR027417 -
Seca6g05246 799 SMART AAA_5 227 355 IPR003593 GO:0016887
Seca6g05246 799 SMART AAA_5 502 641 IPR003593 GO:0016887
Seca6g05246 799 FunFam ATPase, AAA family protein 464 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05246 Seca-Chr6 119342498 119348428 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05246 226 762 Calmodulin-binding Proteins AT3G56690 34.641 3.05e-94 315