Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05230 ATGTCTCTCCCAGGCCGTCCTCGTATTGTAGTAAATGGGGTTCGAAGAACGAGAACCTTCCATTATTTCTGGTGCCTAAATTGCCAACGTACAGTGAGAATACCCTCTACAAATACAGATGCCTCTTCTTCATGTCCCTATTGCTTCCATCAATTGCATTATGAGCTTGATATCTCAAGGCCAAGGCTTCTCATGAACGTTCCTAATAACTTGGAACCTTCCCCTTCTACTCAGCTAATACATAGCTTGGCCCTCATGCTTGATCCATCTCCGAGAAGACAAAACAACCATTTGAACACAAGAACACAATGGGAAACAGAACATGAAGATAATAGTACAACTACAAATCCACAAGGTTGGATTACCCTCCGATTTGTTCCACCCACAAGGCCTATTTCCCCACCACAAAACTTTGCTCCTAATGCCACCCCTTTTGAGAATACATTAGATGATTTCATTGATGGGATGATTCAGAATAATAATAGACCAGGGCCACCTCCAGCATCATCTTCAGCCATTGCAGCCTTGCCAATGGTGAAAGTGACACAAGCACATTTGGCAAGTGACCCCAATTGTCCAATATGCAAAGATGAGTTTCAGCTTGATATGGAAGTGAGAGAGTTGCCATGCAAGCATTTCTATCATTCTGATTGTGTTGTCCCTTGGCTGTGCATGCATAATACTTGTCCTGTTTGCCGCTATGAGCTACAAGGTGCTTCTAATGCTAATTACCTTTTCCAAAATGAGAATTATGAGCAAAGGTTTGGTTTTGAGGATGTTACAAGCAGCTTGAACTGGATTTGGACCCAAGTAGCTTCCTTCAGGCCTATCCGTGCAGTCCTAGATTGGACACAATCCTACTTTGATTTCCACGAAAATCGTCATAGTGGTGGTCGCAGAGGTAGCTCTTGGTGGCGAGCATTGCTTGTTTTATAG 936 0.4327 MSLPGRPRIVVNGVRRTRTFHYFWCLNCQRTVRIPSTNTDASSSCPYCFHQLHYELDISRPRLLMNVPNNLEPSPSTQLIHSLALMLDPSPRRQNNHLNTRTQWETEHEDNSTTTNPQGWITLRFVPPTRPISPPQNFAPNATPFENTLDDFIDGMIQNNNRPGPPPASSSAIAALPMVKVTQAHLASDPNCPICKDEFQLDMEVRELPCKHFYHSDCVVPWLCMHNTCPVCRYELQGASNANYLFQNENYEQRFGFEDVTSSLNWIWTQVASFRPIRAVLDWTQSYFDFHENRHSGGRRGSSWWRALLVL. 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05230 311 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 106 236 - -
Seca6g05230 311 SUPERFAMILY RING/U-box 172 237 - -
Seca6g05230 311 FunFam E3 ubiquitin-protein ligase RING1-like 155 239 - -
Seca6g05230 311 ProSiteProfiles Zinc finger RING-type profile. 192 233 IPR001841 -
Seca6g05230 311 SMART ring_2 192 232 IPR001841 -
Seca6g05230 311 Pfam Ring finger domain 191 233 IPR001841 -
Seca6g05230 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 239 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05230 Seca-Chr6 119223701 119224899 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05230 1 290 C3H Transcription Factor Family AT1G68180 32.877 4.05e-44 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05230 K11982 - gmx:100793656 427.557